Single miRNA

Atr-MIR8586a

Basic info.

miRNA locus ID
Atr-MIR8586a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00048 2976707 2976829 -

Comments
A member of MIR8586

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  GAC   T   T   T   TA           T     C    TG       CAACCTCTC
     CGA GGC TAC TTT  CTCTGTTGTTG GAGAA AAAA  GGAATCC         
     ||| ||| ||| |||  ||||||||||| ||||| ||||  |||||||         A
     GTT TCG ATG AAA  GAGACAACAAT CTCTT TTTT  CTTTAGG         
AACAA   T   T   T   AG           T     T    CA       CTAACAACT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00074.91	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.85	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.16	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.163	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.189	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.68	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.651	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.105	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00202.7	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.36	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.120	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.93	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.158	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.109	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.2	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00858.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.46	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.244	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.170	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.544	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.41	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.52	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.263	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.3	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.44	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.296	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.146	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.370	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.171	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.49	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.99	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.284	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.116	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.58	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.269	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.158	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.200	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.77	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.266	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.45	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.382	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.66	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.75	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.127	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.229	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.516	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.300	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.322	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.73	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.56	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.47	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.40	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.33	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.412	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.42	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.137	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.190	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.67	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.111	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.425	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.110	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.164	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.74	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.220	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.87	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.25	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.58	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.128	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00128.21	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.68	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.311	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.205	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00186.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.91	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.167	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.132	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.131	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.154	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.219	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.157	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.101	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.360	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.256	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.100	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.70	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.193	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.80	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.147	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.198	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.146	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.204	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.161	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.44	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.14	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00543.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.45	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.181	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.196	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.45	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.345	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00182.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.155	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.260	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00151.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00151.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.373	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00168.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.7	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.105	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.300	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.268	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.267	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.84	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.290	5	NA	NA