Single miRNA

Atr-MIR8588a

Basic info.

miRNA locus ID
Atr-MIR8588a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00004 6062181 6062366 +

Comments
A member of MIR8588

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  A                                        C   -  CGTGAGACTAGGGGTCACAGAGATTAGGCTTTACCAGAACAACTG
   TGGGAAGAGATGAAAAACACCGAGCTCCCAGGGTTAATGG GGT CT                                             
   |||||||||||||||||||||||||||||||||||||||| ||| ||                                              
   ACCCTTCTCTACTTTTTGTGGTTTGAGGGTCCTAATTACC TTC CC                                             
ATA                                        -   A  AGCGTCTCTAGTCCGCTACATCTAATTAGAATAGAAAACTCAAGA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00025.85	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.189	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.105	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.77	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.41	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.195	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.253	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.239	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.205	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.79	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.182	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.68	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.136	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.140	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.288	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.146	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.62	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.71	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.279	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.562	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.138	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.24	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.362	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.103	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.15	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.15	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00174.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.315	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.43	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.95	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.121	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.153	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.70	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.226	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.116	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.305	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.166	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.122	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.294	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.213	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.159	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.182	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.232	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.86	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.127	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.134	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00209.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.7	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.64	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00164.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.344	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.147	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.172	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.73	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.110	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.92	5	NA	NA