Single miRNA

Atr-MIR8603a

Basic info.

miRNA locus ID
Atr-MIR8603a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00116 1378348 1378519 +

Comments
A member of MIR8603

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

      --TTCTTTTA  T      C         T              T AAATGC    A TTGGAACGTGAAGGTATGGCCGAG
ATCCGA          CT TACATG CGAATCACA GCTCAAAGAAATCC C      GAAG C                        
||||||          || |||||| ||||||||| |||||||||||||| |      |||| |                        C
TAGGTT          GG ATGTAC GCTTGGTGT CGAGTTTCTTTAGG G      CCTA C                        
      CTACTCTAAG  T      A         T              T --ACAC    - AGAGGTTTAAATGGTGGGACTATC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00063.28	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.32	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.36	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.26	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.34	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.9	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.222	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00161.25	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.78	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.28	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.382	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.190	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.148	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.138	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00185.19	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.10	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.220	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.134	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.140	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.47	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.8	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.10	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.149	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.44	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.162	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00161.29	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.19	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.145	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.240	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.334	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.140	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.138	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.143	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.165	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.54	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.41	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.228	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.149	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.68	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.35	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.195	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.194	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.22	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.371	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00132.7	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.70	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00190.9	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.51	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.22	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold03501.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.14	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.132	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.108	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.469	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.586	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.140	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.107	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.59	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.20	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.143	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.143	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.147	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.55	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.76	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.182	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.232	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.555	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.155	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.156	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold02556.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.231	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.198	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.34	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.90	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.129	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.113	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.335	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.56	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.444	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.183	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.207	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.86	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.94	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.360	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.263	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01570.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.260	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.390	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.161	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.157	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.247	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.101	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.87	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.21	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.217	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.240	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.96	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.400	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00182.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.112	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00377.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.44	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.47	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.107	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.45	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.184	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.110	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.306	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.210	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.120	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.153	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.87	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.169	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00269.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00172.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.255	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.57	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.342	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.151	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.389	5	NA	NA