Atr-MIRN1

Basic info.

• miRNA locus ID
• Atr-MIRN1

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00001  1416817  1417058  -

• Comments
• A member of MIRN1

• Confidence level
• 

Secondary structure and sequence

          C  T            G       C         CT                                                         -   -   ----GTG     TT
  TTGGGAGG CT CTATGGCCTGTG GCCATAG ATCCTCACT  AATATTTATTTTTTTGTATTTATCTTGTTTATTTATAGTCCTTCCTTGAGTTTTATT AAA CTA       AGTGT  
  |||||||| || |||||||||||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||       |||||   
  AATCCTTC GA GATACCGGACAC CGGTGTC TAGGAGTGA  TTATAAGTAGAAAAACATAAATAGAACAAATAAATATCAGGAAGGAGTTCAAAATAA TTT GAT       TTACA  
TA        T  C            A       T         TT                                                         A   C   AATGATG     TT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]