Single miRNA

Atr-MIRN22a

Basic info.

miRNA locus ID
Atr-MIRN22a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00014 5920633 5920878 +

Comments
A member of MIRN22

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

                         TTTGTGATTTGAATATTTTGCTCAAGATCGCGCAGTTCGGTCATATACATTGCATCAAGGTCCTTGTCTATCTTTACGCAAGACATTACCATTGGTTTGATGATGAAG
                    AAGTT                                                                                                            
                    |||||                                                                                                             
                    ATAAG                                                                                                            
TAACTCCATTACTTCTTCGC     ACGTGTTCTAGTGCGCAAATTGGTACTTGTCGCGTAGCTCCATGTTCAGATAGTAAAAAGAAGAAGAAGTAGTCTTTTGGTAAGAGGGACAAGGGAATTAAAGGAAGA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00001.225	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.97	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.40	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.57	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.282	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.123	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.260	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.282	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.361	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.24	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.42	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.134	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.53	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.222	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.44	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.134	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.97	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.271	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.10	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.439	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.292	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.37	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.231	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.232	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.251	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.24	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.66	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.185	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00868.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.128	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.274	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.103	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.258	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00133.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.104	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.71	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.98	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.101	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.242	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.29	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.91	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.121	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.79	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.82	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00203.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.331	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.21	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.111	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00239.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.244	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00182.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold04023.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01571.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00263.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00263.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02547.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.58	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.81	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.244	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.129	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.99	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.274	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.152	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.169	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.229	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.98	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.190	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.138	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.82	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.59	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.15	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00268.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.273	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.217	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.47	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.47	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00100.56	5	NA	NA