Atr-MIRN22b

Basic info.

• miRNA locus ID
• Atr-MIRN22b

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00014  523774  524017  +

• Comments
• A member of MIRN22

• Confidence level
• 

Secondary structure and sequence

  AT   TTTTT  C   A         T           A    -A      TA           A    TC     ------------------      TACAAG    -AG    TA  -GAG  GA GC
    GGG     GG TTG ATATTTTGC CAAGATCACGC GTTC  TTCATA  CAATGCATCGA GTAC  GTCTA                  TCATTA      GCCC   TTTC  TT    TT  C  
    |||     || ||| ||||||||| ||||||||||| ||||  ||||||  ||||||||||| ||||  |||||                  ||||||      ||||   ||||  ||    ||  |  G
    CCC     CC AAC TATGAGACG GTTCTAGTGCG CAAG  GAGTAT  GTTACGTAGTT CATG  CAGAT                  AGTAGT      TGGG   GGAG  AA    AG  G  
AGCT   TCTAT  C   A         T           -    AC      TC           C    TT     AGAGAAGAAGAAGAAAGA      -CATAG    AAG    TG  AAAG  AG AG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]