Single miRNA

Atr-MIRN23b

Basic info.

miRNA locus ID
Atr-MIRN23b

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00014 5935402 5935613 -

Comments
A member of MIRN23

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

       -   C     TAA      T      TA    AA               CCTC   T      T       G     AGATTTAGGAAGCTTGATGAATG
 ATTTGA AGA CCAAA   ATTTTG TCAAGA  GTGC  CTTATTCATGGGTAG    TCG AGTGTC GCACATC TCTGA                       
 |||||| ||| |||||   |||||| ||||||  ||||  |||||||||||||||    ||| |||||| ||||||| |||||                       G
 TAAATT TCT GGTTT   TAAAAC AGTTCT  CACG  GGATAAGTATTCGTC    AGC TCGTAG TGTGTAG CCCTT                       
C      C   A     TCA      T      CC    CC               ATTT   T      T       -     TATTCGGTACCGGAAGGGAGAGG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00022.150	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.142	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.282	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.179	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.281	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.190	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.269	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.125	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.169	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.63	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.49	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.410	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.29	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.115	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.38	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.92	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.196	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.57	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.81	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.52	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.123	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.82	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.118	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03469.2	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.7	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.296	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.225	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.97	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.40	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.207	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.17	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.26	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.168	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.333	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.102	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.41	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.173	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.185	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.382	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.63	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.205	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.369	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.24	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.303	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.324	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.218	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.103	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.214	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.110	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.581	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00210.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.246	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00134.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.612	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.108	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00124.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.310	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.379	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00190.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.123	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.15	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.211	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.119	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.304	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.369	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.61	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.124	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.82	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00174.34	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.402	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.230	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.260	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.269	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.111	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.88	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.139	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.24	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.187	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.131	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.274	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00118.22	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.44	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.85	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.78	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02509.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.58	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.70	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.159	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.97	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.130	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.120	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.269	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold04298.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.245	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.412	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.67	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.262	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.239	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.60	5	NA	NA