Single miRNA

Atr-MIRN24a

Basic info.

miRNA locus ID
Atr-MIRN24a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00028 3373375 3373545 +

Comments
A member of MIRN24

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  GGACATTGACAAATTGCCACA   A  A           C   AA   T   TGTCGACTGTGGTCATGCTACCGTTTCACCCTT
                       CTG CA ATTGCCACATG CCA  GTG AAA                                 
                       ||| || ||||||||||| |||  ||| |||                                 C
                       GAC GT TGACGGTGTAC GGT  GGG TAG                                 
ATAATAACAATTTCTCTACCATA   A  C           C   -A   -   GTTCGCTATTCAAGCCTCTCATGCTAGGAGATA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00002.172	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.26	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.226	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00073.66	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.101	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.96	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.128	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.124	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.117	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.90	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.80	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.116	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.129	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.68	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.261	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.10	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.73	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.141	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.284	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.248	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00198.5	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.181	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.536	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.252	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.53	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.288	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00140.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.62	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.102	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.171	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00182.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.358	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00198.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.135	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00513.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.213	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.196	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.61	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.21	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.571	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.177	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.424	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold04823.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.90	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.7	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.130	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.324	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.204	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.301	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.128	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.152	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.265	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.116	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00162.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.195	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.135	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.184	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.55	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.169	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.131	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.253	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.130	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.433	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.78	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.545	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.74	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00115.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00264.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.448	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.397	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.199	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.101	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05169.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.159	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.47	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.87	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.236	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.165	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.242	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.15	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.211	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.572	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.136	5	NA	NA