Single miRNA

Atr-MIRN25c

Basic info.

miRNA locus ID
Atr-MIRN25c

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00008 2639550 2639652 +

Comments
A member of MIRN25

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

       ATA   C         A    A   - C       ----------    AG
  GTGAC   ATC ACATGGGGT TGAC TCA C ACATGAA          CCAC  
  |||||   ||| ||||||||| |||| ||| | |||||||          ||||   
  CACTG   TAG TGTACCTCA ACTG AGT G TGTACTT          GGTG  
CA     CAG   A         C    C   A A       CGTAATTTAC    AT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00048.131	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.210	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.3	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.258	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.17	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.199	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.112	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.3	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.29	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00160.3	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.21	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.35	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.198	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold04407.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.186	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.392	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.46	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.373	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.92	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.165	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.82	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.160	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.259	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.82	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.204	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.45	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.146	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.293	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.120	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.164	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.568	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.123	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.203	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.391	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.335	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.36	5	NA	NA