Single miRNA

Atr-MIRN26a

Basic info.

miRNA locus ID
Atr-MIRN26a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00029 601903 602019 -

Comments
A member of MIRN26

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  AAAATGAGTAATAAAAA   C             G        GAGAGAAA     CCCTC
                   GCA TATTGAGTGCAGC TTGATGAA        ACCCA     
                   ||| ||||||||||||| ||||||||        |||||     A
                   CGT ATAACTTACGTCG GACTACTT        TGGGT     
TTTGGTCACCATTAGCTTC   A             G        --------     TAACA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00071.177	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.16	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.257	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.8	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.99	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.91	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.292	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.16	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.37	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.275	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.39	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.70	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00279.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.185	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.43	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.132	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.202	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00098.29	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.251	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.228	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.106	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.30	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00093.21	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.17	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.212	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.116	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.216	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.132	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.4	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.34	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.128	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.219	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.169	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.148	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.150	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.97	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.132	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.146	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.305	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.61	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.85	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.94	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.198	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00199.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.256	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.162	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.185	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.57	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.199	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00100.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.356	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.130	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.221	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.148	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.172	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.182	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00143.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.91	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.341	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00252.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.377	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.305	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.136	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.249	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.321	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00475.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.481	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.481	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.71	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00140.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.146	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.90	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.328	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00073.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.85	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.70	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.455	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00168.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.101	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.114	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.369	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.258	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.135	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.345	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.160	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.44	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.59	5	NA	NA