Single miRNA

Atr-MIRN2

Basic info.

miRNA locus ID
Atr-MIRN2

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00013 4022494 4022586 +

Comments
A member of MIRN2

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  GAATATTACCCAAGATTAGA  G      C      ----   AAAAG
                      GT GAGTTC AGGGTT    GAG     
                      || |||||| ||||||    |||      
                      CG TTCAAG TTTTAA    CTC     
TCGAGTATAAGGACGAGTTTTC  G      -      GAAT   GTGAA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00013.72	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.57	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.114	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.210	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.134	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.288	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.29	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.222	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.586	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.465	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.67	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.83	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.413	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.167	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.130	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.174	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.112	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00084.5	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.33	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.186	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.142	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.277	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.91	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.177	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.236	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.70	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.155	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold01922.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.546	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.119	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.75	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.25	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.137	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold01570.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.15	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.113	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.136	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.15	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.225	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.56	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00151.25	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.183	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.172	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.135	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.386	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.386	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.311	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.529	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.255	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.15	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.146	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.80	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.168	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.180	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.175	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00200.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.362	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.152	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.82	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.129	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.114	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02552.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.111	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.291	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.144	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.267	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.111	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.194	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.272	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.360	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.79	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.130	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05122.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.273	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.273	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.135	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.223	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.235	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.306	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.174	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.272	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.340	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.59	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.67	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.175	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.191	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.77	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.210	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.111	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.405	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.170	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00164.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.119	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.119	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.85	5	NA	NA