Single miRNA

Atr-MIRN30a

Basic info.

miRNA locus ID
Atr-MIRN30a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00092 2660520 2660644 -

Comments
A member of MIRN30

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  TGGTGTTCTAGACTATC                                  TCTAAGACAA
                   TATTTTAGTTGGATGGTGTAGATTTGACATGTTT          
                   ||||||||||||||||||||||||||||||||||          T
                   ATAAAATTAATCTACCATATCTAAACTGTAACAG          
CTACGAAAGTTAAAAATTA                                  TCTAAAACTG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00003.414	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.244	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.40	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.25	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.199	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.200	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.45	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.46	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.42	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.78	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.345	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.191	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.32	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.148	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.128	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.127	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.69	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.269	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.114	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.49	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00203.17	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.71	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.31	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.45	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.76	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.17	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00980.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.273	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.212	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.257	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00163.22	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.378	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.46	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.37	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.257	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.98	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.217	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.265	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.147	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00486.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00173.4	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.278	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.255	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.300	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.390	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.66	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00134.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.336	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.137	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.578	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.183	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.160	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.154	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.235	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.102	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.277	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03187.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.119	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.442	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.120	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.140	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.252	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00098.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.52	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00115.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.158	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.107	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.541	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.202	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.212	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.135	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.236	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.116	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.70	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.81	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.118	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.159	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.328	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.121	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.190	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.352	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.351	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.245	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.245	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.22	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.290	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.58	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.330	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.127	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00160.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05703.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.657	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.237	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00186.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.219	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.330	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.110	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.96	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00133.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.415	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.85	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.128	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.210	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.62	5	NA	NA