Atr-MIRN31b

Basic info.

• miRNA locus ID
• Atr-MIRN31b

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00045  5142961  5143243  -

• Comments
• A member of MIRN31

• Confidence level
• 

Secondary structure and sequence

      C         CA       --         A A      CTAA           CC     A   CTTAGTG   CACAC    T         --         --ACT         TAAA    C     A   -     AC
    TG TTTATTTTT  TTTTGTT  TCTACAAAT G AATGAT    AAAATTTGGAG  TGTGT CAT       AGG     TTAA AAAAATATA  AAAAAAATA     TGTAAAAAA    TTGA CAAAA ACC CTAAA  
    || |||||||||  |||||||  ||||||||| | ||||||    |||||||||||  ||||| |||       |||     |||| |||||||||  |||||||||     |||||||||    |||| ||||| ||| |||||   
    AC AAGTAAAAA  AAAATAA  AGATGTTTA C TTACTA    TTTTAAACCTC  ATACA GTA       TCC     GATT TTTTTGTAT  TTTTTTTAT     GTATTTTTT    AACT GTTTT TGG GGTTT  
TATC  A         --       AA         G C      --AA           AC     A   TTTTTTA   ACTTA    -         AG         AAATT         ---C    A     A   A     TT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]