Atr-MIRN31c

Basic info.

• miRNA locus ID
• Atr-MIRN31c

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00061  2639358  2639638  +

• Comments
• A member of MIRN31

• Confidence level
• 

Secondary structure and sequence

              C     --             A           T    A  -CA   ATT    AAAAATAAGA A    TCG       --         ATTT   A  -       -                 AAAAA
AGTGTTTTATTTTT ATTTT  TTTTCTACAAATC GAATGACCTGA ATTT GA   TAT   CATA          G ATCT   AAAAATA  TAAAAAAAT    TAT TG AAAACAA TTGATCAAAATACCCCC     
|||||||||||||| |||||  ||||||||||||| ||||||||||| |||| ||   |||   ||||          | ||||   |||||||  |||||||||    ||| || ||||||| |||||||||||||||||      
TCACAAAATAAAAA TAAAA  AAAAGATGTTTAG CTTACTGGACT TAAA CT   ATA   GTAT          C TAGA   TTTTTAT  ATTTTTTTG    ATA GC TTTTGTT AACTAGTTTTATGGGGG     
              A     TA             C           T    A  CCC   CAT    AATAACTCCG A    TTA       AC         ----   G  A       T                 CTTTG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]