Atr-MIRN31d

Basic info.

• miRNA locus ID
• Atr-MIRN31d

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00092  547758  548033  -

• Comments
• A member of MIRN31

• Confidence level
• 

Secondary structure and sequence

                    TCATTT              A         A             C   A   -----CT   T    CG   AT        TT        A   --        CCA     C         AATTT
       AGTGTTTTATTTT      TTTTTCTACAAATC GAGTGATCT AAATTTGGAGTGT TGT CAT       TAG GAGA  CTA  AAAAATAT  AAAAAATA TTT  GTGAAAAA   ATTGA CAAAATATT     
       |||||||||||||      |||||||||||||| ||||||||| ||||||||||||| ||| |||       ||| ||||  |||  ||||||||  |||||||| |||  ||||||||   ||||| |||||||||     T
       TTACAAAGTAAAA      AAAAAGATGTTTAG CTTACTGGA TTTAAATCTCGCA ACA GTA       ATC TTCT  GAT  TTTTTATA  TTTTTTAT AAA  TATTTTTT   TAACT GTTTTATGG     
CAGTCCT             -----T              C         C             C   A   TTTTTTT   -    TA   GT        TT        A   TG        ---     A         GGGCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]