Atr-MIRN31e

Basic info.

• miRNA locus ID
• Atr-MIRN31e

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00153  825068  825351  -

• Comments
• A member of MIRN31

• Confidence level
• 

Secondary structure and sequence

    T          C    -               A   AAC             G  A   A    -TT   G   CGC    AAT             -  -   ATC          AA           GA   CCAAAAC
 AGT TTTTATTTTT ATTT TTTTTTTACAAATCG AAT   TTGAAATTTGGAG GT TGT CATC   ACT AGG   ATCT   AAAAATATACAAA CA ATT   CGTGAAAAAT  ATTGACCAAAA  CTT       
 ||| |||||||||| |||| ||||||||||||||| |||   ||||||||||||| || ||| ||||   ||| |||   ||||   ||||||||||||| || |||   ||||||||||  |||||||||||  |||        
 TCA AAAATAAAAA TAAA AAAAAGATGTTTAGC TTA   GACTTTAAACCTT TA ATA GTAG   TGA TCC   TAGA   TTTTTATATGTTT GT TAA   GTACTTTTTG  TAACTGGTTTT  GAA       
A   C          A    T               C   CTA             G  C   A    TTT   -   TTT    AAC             T  A   AAT          --           AA   AACTTTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]