Atr-MIRN33a

Basic info.

• miRNA locus ID
• Atr-MIRN33a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00027  6034564  6034742  +

• Comments
• A member of MIRN33

• Confidence level
• 

Secondary structure and sequence

  CTA           C   C C              CC        T             C      A        AATCA   -CC    C
     TGAGACCCTCC ATA C ATGTGTGTAGGATT  AAAGGGTC TCATTAAATTTGG ACAGAT TCTAAAAA     AGT   CACA 
     ||||||||||| ||| | ||||||||||||||  |||||||| ||||||||||||| |||||| ||||||||     |||   |||| C
     ACTCTGGGAGG TAT G TGCACGTATTCTAA  TTTTCTAG GGTAATTTAAACT TGTCTA AGATTTTT     TCA   GTGT 
TTTAA           A   C A              AA        T             C      G        -----   ATA    A

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]