Single miRNA

Atr-MIRN35b

Basic info.

miRNA locus ID
Atr-MIRN35b

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00079 2000500 2000628 -

Comments
A member of MIRN35

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  TATTATATAC       TT                   --------------        A      TCTT
            TTTCATC  GTGGTTCAAAATTTATATC              ACTGTTTT TTTTAA    
            |||||||  |||||||||||||||||||              |||||||| ||||||     
            GAAGTAG  CACCAAGTTTTAAGTATAG              TGATAAAA AAGATT    
GTCTGCACTCTA       CC                   CAAAAAACTTAAAA        -      TTTT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00040.279	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.136	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.24	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.254	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.141	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.96	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.160	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.513	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.11	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00479.3	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.274	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.259	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.23	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.542	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00125.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.53	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.235	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.251	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.102	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.57	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.73	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.86	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.149	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.35	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.28	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.179	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.377	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.148	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00196.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00343.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.58	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00182.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.225	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.140	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.490	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.96	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.25	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.167	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.203	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00145.29	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.27	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.193	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.168	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00127.27	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.163	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.345	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.79	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00491.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.94	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.247	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.501	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.173	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.114	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.43	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.44	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.136	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.77	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.236	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.239	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.313	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00197.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00197.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.145	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.245	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.211	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.83	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.202	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.181	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00161.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.189	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.59	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.209	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.213	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.193	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.71	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03357.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.79	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.213	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02291.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.414	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00140.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.596	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.57	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.132	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.166	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.13	5	NA	NA