Single miRNA

Atr-MIRN37b

Basic info.

miRNA locus ID
Atr-MIRN37b

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00384 16639 16807 -

Comments
A member of MIRN37

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

 TTATATTTTTCAT    -TGT   T -       -         CGAGAA   ATATGA  T  AGGTGAAAATGATATATAAGTATTAT
              GGGC    TTG C TCGGCGA GAATTGCCT      CCC      GG GA                          
              ||||    ||| | ||||||| |||||||||      |||      || ||                           
              CCCG    GAC G GGTTGCT CTTAGTGGG      GGG      AA CG                          
CTTAAAAACGTCCC    TTGT   T C       G         --AATA   ------  -  AGATGTTAACAAGCTTCTTTTATTCT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00019.39	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.167	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.137	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.91	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.175	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.141	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.190	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.198	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.93	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00606.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.19	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.74	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.157	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00183.22	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.294	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.194	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.62	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.172	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.147	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.65	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.186	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.127	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.36	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.281	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.26	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.131	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.116	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.352	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00152.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.176	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.61	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.233	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.348	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00876.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.292	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.310	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.353	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.42	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.23	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.408	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00132.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00269.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.474	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.97	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00263.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00586.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00140.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.117	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05215.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.171	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.124	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.128	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.623	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.123	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.238	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.175	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.214	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.155	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.200	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.162	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.211	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.98	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.350	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.237	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.167	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.182	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.104	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00170.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.519	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.597	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.108	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.107	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.264	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.262	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.294	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.151	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.107	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.266	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.122	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.58	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00133.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.114	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.42	5	NA	NA