Atr-MIRN38a

Basic info.

• miRNA locus ID
• Atr-MIRN38a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00040  5153639  5153939  -

• Comments
• A member of MIRN38

• Confidence level
• 

Secondary structure and sequence

GGTAAA     TAAGT   G   TA   AC     -A    AACATTGA        ---T  AGTAA TC   --    TCTAGGTGGATTTGCCACAACATGGGCATTCTTCTTAGCAATAATTATTTCAGTAGGATAATGGCTGAGAGGATTTGAAAG
      TGAGG     GTT CAT  TGA  CTTTG  TTCA        CGTGTTGT    GG     C  ATT  CCCT                                                                                 
      |||||     ||| |||  |||  |||||  ||||        ||||||||    ||     |  |||  ||||                                                                                 G
      ACTCC     TAA GTG  ACT  GAAAC  AAGT        CTTTTCTT    AT     T  TTC  GGTT                                                                                 
    GA     CCCAT   G   -C   --     AA    --------        TCTC  ----- --   GA    CGCGGATCGAACCCACCTCTCAAAGAGGTTAAAACGTACACAAACCGACTTTTTAGCATAAGCAAACAACAGGAAGTTTAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]