Single miRNA

Atr-MIRN38b

Basic info.

miRNA locus ID
Atr-MIRN38b

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00102 1300312 1300544 +

Comments
A member of MIRN38

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

   C    GGAC      ---GT   C       ---    A     TATTCC   CATACCTTTGTTTTTTTTTCTCTTAGCCTTTGTTTGGCGAGCTGCTGCAAGTTTTCGATGAGATCTTT
    CCAA    TATGCT     TTT AATCAAA   TCGT GATGT      GGT                                                                    
    ||||    ||||||     ||| |||||||   |||| |||||      |||                                                                    G
    GGTT    GTACGA     AAA TTAGTTT   AGTA TTACG      GAA                                                                    
GATA    ----      ATTAT   C       CCA    -     --TTAT   TAGAGTAGAAGAGTTAACAGTTTTAGAAAATAGCTCATTTAATCTTTAGATACAAAGATTTCGTCGTA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00089.24	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.108	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.119	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.149	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.450	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.527	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.16	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.155	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.232	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.21	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.34	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.34	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.60	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.116	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.27	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.108	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.385	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05705.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.60	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.337	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.238	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.116	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.402	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.106	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.77	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.105	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.56	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.216	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.184	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00073.66	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold03795.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.102	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00084.5	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.66	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.66	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.122	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.22	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00181.7	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.5	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.243	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.243	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.261	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.214	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.33	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.264	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.364	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.138	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.7	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.360	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.30	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.197	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.242	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.421	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.108	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.110	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.122	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.355	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.123	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.136	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.123	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.104	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.187	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.486	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00174.31	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.271	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.27	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.143	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.154	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.253	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.207	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.382	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.109	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.181	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.114	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.273	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.216	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.198	4.75	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.152	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.384	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.408	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.55	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.261	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.99	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.144	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.199	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.229	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.55	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.138	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.380	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.244	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.197	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.554	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.112	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.222	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00221.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.468	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.275	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.164	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.43	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.133	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.192	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.273	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.92	5	NA	NA