Atr-MIRN3

Basic info.

• miRNA locus ID
• Atr-MIRN3

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00047  1530597  1530815  +

• Comments
• A member of MIRN3

• Confidence level
• 

Secondary structure and sequence

  GGAT    G    T      G     -   -A    GT     C    G   A      --     AAGCTGTAGCTTCAGGGTAGGTTATCTGGTGAATAGGTGATTGTG
      TTTG TATA TGGGTT TTGAG CAG  CTTG  TTGGG TGGA AAT TATGGG  TTTTG                                             
      |||| |||| |||||| ||||| |||  ||||  ||||| |||| ||| ||||||  |||||                                             A
      GGAT ATAT ACCCAA AGCTC GTT  GAGC  GGCTC ATTT TTG GTACTC  TATAT                                             
GAAAGT    G    T      G     C   AA    --     T    G   A      TT     TATGGTATGCTTTCCCTTGGTAACGGAAACCGTTGTTCCAGTGGA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]