Single miRNA

Atr-MIRN40a

Basic info.

miRNA locus ID
Atr-MIRN40a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00007 5418979 5419102 +

Comments
A member of MIRN40

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

          C   T      C              A   CT     A      ----     TG
  TAGGATCT AAA GATCAT ATTAAATTTGGCAT GAT  TTGGA AAGTTA    TCGCA  
  |||||||| ||| |||||| |||||||||||||| |||  ||||| ||||||    |||||   
  ATCCTGGA TTT CTAGTA TAATTTAAACCGTA CTA  GATCT TTCAGT    AGTGT  
AC        A   C      A              C   TT     A      TCAG     GG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00105.25	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.74	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.361	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.325	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.18	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.73	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.355	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.29	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.44	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.89	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.74	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.112	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.253	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.183	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00133.60	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.19	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.32	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.76	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.49	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.112	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.315	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.264	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.520	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.43	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.135	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.63	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.92	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold01542.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.128	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.56	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.121	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.158	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.92	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.306	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00112.21	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.110	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.178	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.306	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.230	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.83	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.183	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.52	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.233	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.74	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.46	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.70	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.137	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.444	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.99	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.474	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00159.25	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00145.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.84	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.586	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.226	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.55	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.551	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.122	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.355	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.125	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.385	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00098.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.416	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.215	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.225	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.125	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.236	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00162.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.109	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.44	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.44	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.74	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.132	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.192	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.217	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00209.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00202.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.206	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.37	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.302	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.92	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.355	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.445	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.125	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.47	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.140	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.412	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.382	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.301	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.156	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.126	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.236	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.330	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.175	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.138	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.128	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.57	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.130	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.95	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.153	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00239.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00141.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.28	5	NA	NA