Atr-MIRN40l

Basic info.

• miRNA locus ID
• Atr-MIRN40l

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00106  1937938  1938061  +

• Comments
• A member of MIRN40

• Confidence level
• 

Secondary structure and sequence

TAGGAC    ----AAAG    CC                       A    ---   AAGTTCCA
      CCCA        ATCA  ATTAAATTTGGCATGGATCTCTA AAAA   ATC        
      ||||        ||||  ||||||||||||||||||||||| ||||   |||        A
      GGGT        TAGT  TAATTTAAACTGTGTCTAGAGAT TTTT   TAG        
 GAAGA    GAATACAA    -A                       C    CAA   AATACCCA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]