Atr-MIRN40n

Basic info.

• miRNA locus ID
• Atr-MIRN40n

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00174  229015  229138  -

• Comments
• A member of MIRN40

• Confidence level
• 

Secondary structure and sequence

                    C                        A      CAA   C  AAC
  TAGGACCTCAAAGGATCA CATTAAATTTGGCATGGATCTCTA AAAAGT   GTC CA   
  |||||||||||||||||| |||||||||||||||||||||||| ||||||   ||| ||    
  ATCCTGGGGTTTCCTAGT GTAGTTTAAACCGTACCTAGAGAT TTTTCA   TAG GT   
AC                  A                        C      --A   T  ACC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]