Single miRNA

Atr-MIRN41a

Basic info.

miRNA locus ID
Atr-MIRN41a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00013 2219082 2219250 -

Comments
A member of MIRN41

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  TGTGGGTCATGTCAGATCC        TG  G      ------CCCT  TAATGACCAAAAATACCCTTACTAAAAAAAACTCTAT
                     TATGTAGA  AC TCACAC          TC                                     
                     ||||||||  || ||||||          ||                                      
                     ATACATCT  TG AGTGTG          AG                                     
ACCAATAGATCGATAGAACCT        CA  -      ATATAACATA  TGATTTTAAATCTATAAATACATGGAAACAAAACATG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00129.8	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.17	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.3	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.33	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00084.20	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.198	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.392	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.27	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.27	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.160	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.199	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00186.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.281	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.29	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.201	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.471	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.209	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.37	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.82	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.164	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01333.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.131	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.206	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.58	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00152.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.215	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.194	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.144	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.188	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.127	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.375	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00164.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.193	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.98	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.230	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.258	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.527	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold04407.1	5	NA	NA