Single miRNA

Atr-MIRN45a

Basic info.

miRNA locus ID
Atr-MIRN45a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00004 10530332 10530448 +

Comments
A member of MIRN45

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  ATAGA        -    ATA        -   CCAAG      AAG   --       G
       AAATAGAA AGGT   GGCGGATG TAG     TGGATC   GCA  GTGGATT 
       |||||||| ||||   |||||||| |||     ||||||   |||  ||||||| T
       TTTATCTT TTCA   CCGCTTGC GTC     ACTTGG   CGT  CACCTAA 
AACAACA        G    -GC        T   -CCTA      ACG   AC       G

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00062.121	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.30	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.277	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.20	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.68	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.407	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.191	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.235	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.97	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.238	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.49	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.499	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.61	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.101	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.64	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.389	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.280	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.89	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.156	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.155	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.337	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.275	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01218.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.97	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.94	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.267	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.255	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.377	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.339	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.162	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.172	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.277	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.420	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.96	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.149	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.86	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.282	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.158	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.184	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.186	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.94	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.99	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.213	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00479.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.271	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.83	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.109	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.211	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.279	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00168.22	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.71	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.77	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.131	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.175	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.79	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.238	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.44	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.159	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.112	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.64	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.217	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.407	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.195	5	NA	NA