Single miRNA

Atr-MIRN4

Basic info.

miRNA locus ID
Atr-MIRN4

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00058 1163667 1163774 +

Comments
A member of MIRN4

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

    C           CC     G        C             G    TTAT
  GA CGTATATTGTA  AATGC GTCCAGCC GCATGAAACAATT TTCT    
  || |||||||||||  ||||| |||||||| ||||||||||||| ||||    A
  CT GCGTATAACAT  TTACG CAGGTTGG CGTACTTTGTTAA AAGG    
GT  A           CT     A        A             -    CATG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00022.15	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.258	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.190	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.6	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold04823.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.42	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.154	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.239	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.191	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.464	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.18	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.86	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00170.25	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.70	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.9	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.240	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.336	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.134	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.11	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.41	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.66	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.74	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.239	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.223	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.107	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.221	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.78	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.26	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.30	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.51	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.211	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.117	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00112.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold04823.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.68	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.176	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.65	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.83	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.148	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.653	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.167	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.23	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.202	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.172	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.220	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.296	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.274	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.31	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.85	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.70	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.101	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.85	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.406	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.122	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.57	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.182	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.101	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.109	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.101	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00183.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.310	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.74	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.201	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.593	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.70	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.107	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.78	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.207	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.121	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00125.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00139.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.156	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.167	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.208	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.217	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.272	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.246	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.356	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.143	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.7	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.59	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.160	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.118	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.597	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.258	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.221	5	NA	NA