Atr-MIRN50a

Basic info.

• miRNA locus ID
• Atr-MIRN50a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00009  7849245  7849378  -

• Comments
• A member of MIRN50

• Confidence level
• 

Secondary structure and sequence

  GCATGAAAGTCTTGTGTA        C       C        GAGCTA    A    C  AT  AA
                    CAAATTGT GGTCGCG TACAGATT      AGCT TGGG TG  GA  
                    |||||||| ||||||| ||||||||      |||| |||| ||  ||  G
                    GTTTAACA CCAGTGC ATGTCTGA      TCGA ACCC AC  CT  
GGTTATCTTTCCCAACCCGC        A       A        --GAAC    C    -  CT  CG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]