Single miRNA

Atr-MIRN53a

Basic info.

miRNA locus ID
Atr-MIRN53a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00023 2754157 2754245 -

Comments
A member of MIRN53

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

AGTT   TG      ----   ATAATC       C       TTAA
    GCA  TGGACA    TGG      CTATCAG TCATTTA    
    |||  ||||||    |||      ||||||| |||||||    A
    CGT  ACCTGT    ACC      GATAGTC AGTAGGT    
  AT   TA      AGAA   GACACA       T       CGTT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00133.7	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.32	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.225	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.214	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.173	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.45	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.66	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.253	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.97	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.168	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.69	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.121	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.453	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.45	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00134.17	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.252	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.325	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00363.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00172.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00127.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.87	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.56	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.71	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.207	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.260	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.158	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.431	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.147	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.281	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.83	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.250	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.453	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01234.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01058.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.115	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.177	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.171	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.213	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.211	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.123	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.95	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.189	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.281	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.181	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00184.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.127	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00113.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.266	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.431	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00251.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.202	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.173	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.256	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.267	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.238	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.115	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.164	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.217	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.605	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.133	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.165	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.118	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.239	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.262	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.125	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.7	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.258	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.261	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.73	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.165	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.374	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.93	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.225	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.90	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.55	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.112	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.161	5	NA	NA