Atr-MIRN54a

Basic info.

• miRNA locus ID
• Atr-MIRN54a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00027  437163  437398  +

• Comments
• A member of MIRN54

• Confidence level
• 

Secondary structure and sequence

  TTA  T      C   GC         -A       T      AGTA   T   TC      ----  ---  ATGTGTCAGGGGTCACCATTATTGCTTAGTAATTATCAGTTCTTACTGAAG
     CA TCCACC TCT  TTCTCCTTT  AGCTATC GGAAAA    ATG GGA  TTGTGA    GG   AC                                                   
     || |||||| |||  |||||||||  ||||||| ||||||    ||| |||  ||||||    ||   ||                                                   A
     GT GGGTGG AGA  AAGAGGAAA  TCGATAG TCTTTT    TAC CCT  ATCCTT    CC   AC                                                   
TCAAA  C      T   GA         AC       -      ----   C   --      AAAT  CCC  CTTAGTCCTGGTCCAAAGGATCTAACATTTCTGTTCGTACTTAGGATCTTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]