Single miRNA

Atr-MIRN5

Basic info.

miRNA locus ID
Atr-MIRN5

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00086 358220 358532 +

Comments
A member of MIRN5

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

        TTATGATTGCAAAAAATAATGGATTTCAAGCTCTAAAAATAATGTATATTGTAACTAATTATCTAAACCGTTCATTTTAAGTGTTCACAAATCTACAAGATTTGAACCTTTTTTGCACTTCAATTTCCACTGCCGATGTTGGA
      CA                                                                                                                                               
      ||                                                                                                                                               A
      TA                                                                                                                                               
AACTTG  CCTAAAAGTTCGAGGCTACGGTTCTGATGTAGATGACCTATTTTCTCGATCCGAAATGCATTTCTTTCACTACGGAGTGGAATCTTGGAACAGAATTTTTATGAGATCCGTAGTATTTAGAAATACTACTGAGATTTTAATTA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00033.36	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.18	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00185.16	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.122	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.124	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.327	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.96	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.14	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.61	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.37	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.165	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold05591.1	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.34	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.269	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.8	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.37	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.27	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.100	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.255	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.161	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.48	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.231	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.24	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.102	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.6	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.222	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.393	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.10	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00150.24	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.117	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.135	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00118.32	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.504	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00181.9	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.96	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00181.24	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00094.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00125.10	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00181.20	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.225	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00181.15	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.97	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.390	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.79	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.242	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.144	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.12	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.33	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.286	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.102	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.125	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.316	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.365	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.80	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.91	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.97	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.398	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.156	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.122	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.211	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.385	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.98	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.61	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.83	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.267	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.52	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.413	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.213	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00197.17	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.255	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.88	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.68	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.67	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.354	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.114	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.139	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.214	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00115.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.157	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.29	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.124	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00140.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.145	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05676.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00145.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.58	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.35	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.109	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.109	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.303	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.122	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.579	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.37	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.222	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.213	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00223.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00133.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.37	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.217	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.136	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.7	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.230	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.150	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.78	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.448	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.448	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.142	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.241	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.59	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.98	5	NA	NA