Single miRNA

Atr-MIRN6

Basic info.

miRNA locus ID
Atr-MIRN6

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00413 4539 4658 -

Comments
A member of MIRN6

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

ACTAACGGAGCGCGGTGT   A    CGGATCGCTCTTACGCCATGCCGGAGCCCCTGTGACAGTGGTC
                  TAC TTGT                                           
                  ||| ||||                                           C
                  GCT TTTA                                           
                     -    CAGTAAGAGTATCGTGCAACAGCCTCGCGGGAATTTGGTATTG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00057.76	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.13	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.13	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.13	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00100.32	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.109	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.125	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.60	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00084.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.91	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.176	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.176	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.108	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.57	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.254	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.462	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.11	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.28	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.24	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.535	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.275	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.114	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.203	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.210	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.206	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.252	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.99	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.383	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00164.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.228	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.106	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.202	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.164	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.204	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.53	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.63	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.321	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.321	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.415	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.319	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.322	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.387	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00184.22	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.184	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.84	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02886.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.381	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.264	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.264	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.168	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.146	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.272	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.159	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00098.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.193	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.426	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.67	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.194	5	NA	NA