Single miRNA

Atr-MIRN7

Basic info.

miRNA locus ID
Atr-MIRN7

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00063 4045604 4045725 +

Comments
A member of MIRN7

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  ATATAATAT     A                                  CG      AAAA
           GGGCC TTGGGGCATTTAGTTTATCTATATGAGGCTGCTG  GCTATG    
           ||||| ||||||||||||||||||||||||||||||||||  ||||||     
           CCTGG AACTCCGTAAATCGAATAGATGTACTCCGACGAC  TGGTAT    
TATAATTTAGA     C                                  --      GGAA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00021.190	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.3	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.309	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.119	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.35	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.97	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.33	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.60	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.161	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00160.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.23	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.571	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.219	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.151	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.59	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.31	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.303	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.56	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.208	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00118.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.56	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.153	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.153	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.124	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.158	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.215	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.332	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.275	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.90	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.34	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.167	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.127	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.364	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.291	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.289	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.136	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.126	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.159	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.125	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.96	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.128	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.586	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.412	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.155	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.413	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.138	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.163	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.264	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.117	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.114	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.522	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00144.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.225	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.235	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.202	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.211	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.121	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.123	5	NA	NA