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Bioproject Description Publication GVCF File Library Num.
PRJNA862919 This study reports one of the first epigenetic clocks in plants and demonstrates the universality of age-associated DNA methylation dynamics which can inform conservation and management practices, as well as our ecological and evolutionary understanding of biological aging in plants. Gardner et al., 2022
72
Library Title Platform Total Base VCF File
SRR20695172 Bisulfite-Seq of Pinus taeda: 10 years 43 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 10 YO Cambium (Loblolly-10) ILLUMINA 14.05 G
SRR20695173 Bisulfite-Seq of Pinus taeda: 19 years 58 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 19 YO Cambium (Loblolly-9) ILLUMINA 15.6 G
SRR20695174 Bisulfite-Seq of Pinus taeda: 19 years 63 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 19 YO Cambium (Loblolly-8) ILLUMINA 16.27 G
SRR20695175 Bisulfite-Seq of Pinus taeda: 19 years 61 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 19 YO Cambium (Loblolly-7) ILLUMINA 16.81 G
SRR20695176 Bisulfite-Seq of Pinus taeda: 37 years 97 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 37 YO Cambium (Loblolly-6) ILLUMINA 13.62 G
SRR20695177 Bisulfite-Seq of Pinus taeda: 37 years 99 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 37 YO Cambium (Loblolly-5) ILLUMINA 13.3 G
SRR20695178 Bisulfite-Seq of Pinus taeda: 37 years 99 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 37 YO Cambium (Loblolly-4) ILLUMINA 15.56 G
SRR20695179 Bisulfite-Seq of Pinus taeda: ~119 years 106 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 119 YO Cambium (Loblolly-28) ILLUMINA 14.02 G
SRR20695180 Bisulfite-Seq of Pinus taeda: ~97 years 112 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 97 YO Cambium (Loblolly-26) ILLUMINA 16.99 G
SRR20695181 Bisulfite-Seq of Pinus taeda: ~82 years 105 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 82 YO Cambium (Loblolly-23) ILLUMINA 12.65 G
SRR20695182 Bisulfite-Seq of Pinus taeda: 28 years 66 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 28 YO Cambium (Loblolly-21) ILLUMINA 12.19 G
SRR20695183 Bisulfite-Seq of Pinus taeda: 46 years 77 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 46 YO Cambium (Loblolly-3) ILLUMINA 13.18 G
SRR20695184 Bisulfite-Seq of Pinus taeda: 28 years 72 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 28 YO Cambium (Loblolly-20) ILLUMINA 13.12 G
SRR20695185 Bisulfite-Seq of Pinus taeda: 28 years 78 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 28 YO Cambium (Loblolly-19) ILLUMINA 14.08 G
SRR20695186 Bisulfite-Seq of Pinus taeda: 1 year 167 cm plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 1 YO Cambium (Loblolly-18) ILLUMINA 15.24 G
SRR20695187 Bisulfite-Seq of Pinus taeda: 1 year 126 cm plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 1 YO Cambium (Loblolly-17) ILLUMINA 16.07 G
SRR20695188 Bisulfite-Seq of Pinus taeda: 1 year 121 cm plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 1 YO Cambium (Loblolly-16) ILLUMINA 14.8 G
SRR20695189 Bisulfite-Seq of Pinus taeda: 55 years 101 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 55 YO Cambium (Loblolly-15) ILLUMINA 2.27 G
SRR20695190 Bisulfite-Seq of Pinus taeda: 55 years 106 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 55 YO Cambium (Loblolly-14) ILLUMINA 1.55 G
SRR20695191 Bisulfite-Seq of Pinus taeda: 55 years 111 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 55 YO Cambium (Loblolly-13) ILLUMINA 1.43 G
SRR20695192 Bisulfite-Seq of Pinus taeda: 10 years 44 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 10 YO Cambium (Loblolly-12) ILLUMINA 973.39 M
SRR20695193 Bisulfite-Seq of Pinus taeda: 10 years 46 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 10 YO Cambium (Loblolly-11) ILLUMINA 1.01 G
SRR20695194 Bisulfite-Seq of Pinus taeda: 46 years 88 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 46 YO Cambium (Loblolly-2) ILLUMINA 4.23 G
SRR20695195 Bisulfite-Seq of Pinus taeda: 46 years 89 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 46 YO Cambium (Loblolly-1) ILLUMINA 1.53 G
SRR20707760 Bisulfite-Seq of Pinus taeda: 10 years 43 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 10 YO Cambium (Loblolly-10) ILLUMINA 1.27 G
SRR20707761 Bisulfite-Seq of Pinus taeda: 19 years 58 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 19 YO Cambium (Loblolly-9) ILLUMINA 1.56 G
SRR20707762 Bisulfite-Seq of Pinus taeda: 19 years 63 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 19 YO Cambium (Loblolly-8) ILLUMINA 784.26 M
SRR20707763 Bisulfite-Seq of Pinus taeda: 19 years 61 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 19 YO Cambium (Loblolly-7) ILLUMINA 525.56 M
SRR20707764 Bisulfite-Seq of Pinus taeda: 37 years 97 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 37 YO Cambium (Loblolly-6) ILLUMINA 1.66 G
SRR20707765 Bisulfite-Seq of Pinus taeda: 37 years 99 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 37 YO Cambium (Loblolly-5) ILLUMINA 676.54 M
SRR20707766 Bisulfite-Seq of Pinus taeda: 37 years 99 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 37 YO Cambium (Loblolly-4) ILLUMINA 578.97 M
SRR20707767 Bisulfite-Seq of Pinus taeda: ~119 years 106 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 119 YO Cambium (Loblolly-28) ILLUMINA 662.27 M
SRR20707768 Bisulfite-Seq of Pinus taeda: ~97 years 112 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 97 YO Cambium (Loblolly-26) ILLUMINA 482.55 M
SRR20707769 Bisulfite-Seq of Pinus taeda: ~82 years 105 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 82 YO Cambium (Loblolly-23) ILLUMINA 459.95 M
SRR20707770 Bisulfite-Seq of Pinus taeda: 28 years 66 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 28 YO Cambium (Loblolly-21) ILLUMINA 777.32 M
SRR20707771 Bisulfite-Seq of Pinus taeda: 46 years 77 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 46 YO Cambium (Loblolly-3) ILLUMINA 456.83 M
SRR20707772 Bisulfite-Seq of Pinus taeda: 28 years 72 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 28 YO Cambium (Loblolly-20) ILLUMINA 611.97 M
SRR20707773 Bisulfite-Seq of Pinus taeda: 28 years 78 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 28 YO Cambium (Loblolly-19) ILLUMINA 473.09 M
SRR20707774 Bisulfite-Seq of Pinus taeda: 1 year 167 cm plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 1 YO Cambium (Loblolly-18) ILLUMINA 461.7 M
SRR20707775 Bisulfite-Seq of Pinus taeda: 1 year 126 cm plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 1 YO Cambium (Loblolly-17) ILLUMINA 1.47 G
SRR20707776 Bisulfite-Seq of Pinus taeda: 1 year 121 cm plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 1 YO Cambium (Loblolly-16) ILLUMINA 836.97 M
SRR20707777 Bisulfite-Seq of Pinus taeda: 55 years 101 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 55 YO Cambium (Loblolly-15) ILLUMINA 1.12 G
SRR20707778 Bisulfite-Seq of Pinus taeda: 55 years 106 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 55 YO Cambium (Loblolly-14) ILLUMINA 753.37 M
SRR20707779 Bisulfite-Seq of Pinus taeda: 55 years 111 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 55 YO Cambium (Loblolly-13) ILLUMINA 696.53 M
SRR20707780 Bisulfite-Seq of Pinus taeda: 10 years 44 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 10 YO Cambium (Loblolly-12) ILLUMINA 479.94 M
SRR20707781 Bisulfite-Seq of Pinus taeda: 10 years 46 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 10 YO Cambium (Loblolly-11) ILLUMINA 499.9 M
SRR20707782 Bisulfite-Seq of Pinus taeda: 46 years 88 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 46 YO Cambium (Loblolly-2) ILLUMINA 2.07 G
SRR20707783 Bisulfite-Seq of Pinus taeda: 46 years 89 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 46 YO Cambium (Loblolly-1) ILLUMINA 753.63 M
SRR20673419 Bisulfite-Seq of Pinus taeda: 10 years 43 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 10 YO Cambium (Loblolly-10) ILLUMINA 2.3 G
SRR20673420 Bisulfite-Seq of Pinus taeda: 19 years 58 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 19 YO Cambium (Loblolly-9) ILLUMINA 2.1 G
SRR20673421 Bisulfite-Seq of Pinus taeda: 19 years 63 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 19 YO Cambium (Loblolly-8) ILLUMINA 1.81 G
SRR20673422 Bisulfite-Seq of Pinus taeda: 19 years 61 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 19 YO Cambium (Loblolly-7) ILLUMINA 1.34 G
SRR20673423 Bisulfite-Seq of Pinus taeda: 37 years 97 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 37 YO Cambium (Loblolly-6) ILLUMINA 1.38 G
SRR20673424 Bisulfite-Seq of Pinus taeda: 37 years 99 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 37 YO Cambium (Loblolly-5) ILLUMINA 1.62 G
SRR20673425 Bisulfite-Seq of Pinus taeda: 37 years 99 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 37 YO Cambium (Loblolly-4) ILLUMINA 1.47 G
SRR20673426 Bisulfite-Seq of Pinus taeda: ~119 years 106 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 119 YO Cambium (Loblolly-28) ILLUMINA 1.5 G
SRR20673427 Bisulfite-Seq of Pinus taeda: ~97 years 112 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 97 YO Cambium (Loblolly-26) ILLUMINA 1.66 G
SRR20673428 Bisulfite-Seq of Pinus taeda: ~82 years 105 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 82 YO Cambium (Loblolly-23) ILLUMINA 1.33 G
SRR20673429 Bisulfite-Seq of Pinus taeda: 28 years 66 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 28 YO Cambium (Loblolly-21) ILLUMINA 2.16 G
SRR20673430 Bisulfite-Seq of Pinus taeda: 46 years 77 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 46 YO Cambium (Loblolly-3) ILLUMINA 1.39 G
SRR20673431 Bisulfite-Seq of Pinus taeda: 28 years 72 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 28 YO Cambium (Loblolly-20) ILLUMINA 2.13 G
SRR20673432 Bisulfite-Seq of Pinus taeda: 28 years 78 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 28 YO Cambium (Loblolly-19) ILLUMINA 1.61 G
SRR20673433 Bisulfite-Seq of Pinus taeda: 1 year 167 cm plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 1 YO Cambium (Loblolly-18) ILLUMINA 1.48 G
SRR20673434 Bisulfite-Seq of Pinus taeda: 1 year 126 cm plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 1 YO Cambium (Loblolly-17) ILLUMINA 1.98 G
SRR20673435 Bisulfite-Seq of Pinus taeda: 1 year 121 cm plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 1 YO Cambium (Loblolly-16) ILLUMINA 2.29 G
SRR20673436 Bisulfite-Seq of Pinus taeda: 55 years 101 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 55 YO Cambium (Loblolly-15) ILLUMINA 2.37 G
SRR20673437 Bisulfite-Seq of Pinus taeda: 55 years 106 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 55 YO Cambium (Loblolly-14) ILLUMINA 1.66 G
SRR20673438 Bisulfite-Seq of Pinus taeda: 55 years 111 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 55 YO Cambium (Loblolly-13) ILLUMINA 1.99 G
SRR20673439 Bisulfite-Seq of Pinus taeda: 10 years 44 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 10 YO Cambium (Loblolly-12) ILLUMINA 1.45 G
SRR20673440 Bisulfite-Seq of Pinus taeda: 10 years 46 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 10 YO Cambium (Loblolly-11) ILLUMINA 2.11 G
SRR20673441 Bisulfite-Seq of Pinus taeda: 46 years 88 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 46 YO Cambium (Loblolly-2) ILLUMINA 1.67 G
SRR20673442 Bisulfite-Seq of Pinus taeda: 46 years 89 ft plant with cambium from USA: Aiken\, South Carolina, RRBS of Pinus taeda: 46 YO Cambium (Loblolly-1) ILLUMINA 2.24 G
PRJNA286703 Genome size and DNA methylation covary across Land Plants Takuno et al., 2016
2
Library Title Platform Total Base VCF File
SRR2070692 Bisulfite-Seq of Pinus taeda: young needs from USA: Davis, Pta_methylome_leaf ILLUMINA 81.18 G
SRR2070693 Bisulfite-Seq of Pinus taeda: megagametophyte from USA: Davis, Pta_methylome_mega ILLUMINA 48.81 G

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