Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
Others

Project

Bioproject Description Publication GVCF File Library Num.
PRJNA212863 The Amborella Genome Sequencing Project is a collaborative NSF-funded project that seeks to produce a high-quality finished genome sequence that will serve as a reference in comparative evolutionary analyses to shed light on the genomic characteristics of the last common ancestor of extant flowering plants. Amborella Genome Project et al., 2013
22
Library Title Platform Total Base VCF File
SRR5293260 RNA-Seq of Amborella trichopoda: mature plant with older roots from USA: California\, university of California Santa Cruz Arboretum, AtrOroots-400bp ILLUMINA 3565175000 bp
SRR5293261 RNA-Seq of Amborella trichopoda: mature plant with old leaves from USA: California\, university of California Santa Cruz Arboretum, AtrOlvs-400bp ILLUMINA 3477114600 bp
SRR5293262 RNA-Seq of Amborella trichopoda: young plant with young leaves from USA: California\, university of California Santa Cruz Arboretum, AtrYlvs-400bp ILLUMINA 3665122200 bp
SRR5293263 RNA-Seq of Amborella trichopoda: mature plant with female buds from USA: California\, university of California Santa Cruz Arboretum, Atrfbuds2-400bp ILLUMINA 3757348200 bp
SRR5293266 RNA-Seq of Amborella trichopoda: mature male plant with flower from USA: Georgia\, Atlanta Botanical Garden, 14A ILLUMINA 2134522000 bp
SRR5293267 RNA-Seq of Amborella trichopoda: mature male plant with bud from USA: Georgia\, Atlanta Botanical Garden, 13A ILLUMINA 1815810400 bp
SRR5293268 RNA-Seq of Amborella trichopoda: mature male plant with shoot from USA: Georgia\, Atlanta Botanical Garden, 12A ILLUMINA 1941763400 bp
SRR5293269 RNA-Seq of Amborella trichopoda: mature male plant with flower from USA: Georgia\, Atlanta Botanical Garden, 11B ILLUMINA 1944571800 bp
SRR5293270 RNA-Seq of Amborella trichopoda: mature male plant with bud from USA: Georgia\, Atlanta Botanical Garden, 10B ILLUMINA 1915964000 bp
SRR5293271 RNA-Seq of Amborella trichopoda: mature male plant with shoot from USA: Georgia\, Atlanta Botanical Garden, 9A ILLUMINA 2195555000 bp
SRR5293272 RNA-Seq of Amborella trichopoda: mature female plant with fruit from USA: Georgia\, Atlanta Botanical Garden, 8AB ILLUMINA 2356073600 bp
SRR5293273 RNA-Seq of Amborella trichopoda: mature female plant with flower from USA: Georgia\, Atlanta Botanical Garden, 7B ILLUMINA 1963003000 bp
SRR5293274 RNA-Seq of Amborella trichopoda: mature female plant with bud from USA: Georgia\, Atlanta Botanical Garden, 6A ILLUMINA 1968217400 bp
SRR5293275 RNA-Seq of Amborella trichopoda: mature female plant with shoot from USA: Georgia\, Atlanta Botanical Garden, 5B ILLUMINA 2042857400 bp
SRR5293276 RNA-Seq of Amborella trichopoda: mature female plant with flower from USA: Georgia\, Atlanta Botanical Garden, 3A ILLUMINA 1863670600 bp
SRR5293277 RNA-Seq of Amborella trichopoda: mature female plant with bud from USA: Georgia\, Atlanta Botanical Garden, 2AB ILLUMINA 2050121600 bp
SRR5293278 RNA-Seq of Amborella trichopoda: mature female plant with shoot from USA: Georgia\, Atlanta Botanical Garden, 1A ILLUMINA 1819882600 bp
SRR3309444 RNA-Seq of Amborella trichopoda: young plant with Whole plant with from USA:Santa Cruz, WPN ILLUMINA 11230767150 bp
SRR3309445 RNA-Seq of Amborella trichopoda: mature plant with Apical mertstem and young leaves from USA:Santa Cruz, APM ILLUMINA 5632272150 bp
SRR3309446 RNA-Seq of Amborella trichopoda: mature plant with Premeiotic female bud from USA:Santa Cruz, FBU ILLUMINA 5811334500 bp
SRR5293264 RNA-Seq of Amborella trichopoda: mature plant with apical meristem from USA: California\, university of California Santa Cruz Arboretum, AtrApMer ILLUMINA 3586976200 bp
SRR5293265 RNA-Seq of Amborella trichopoda: mature plant with apical meristem from USA: California\, university of California Santa Cruz Arboretum, AtrApMer ILLUMINA 4482865400 bp
PRJNA748676 RNAseq data from flower buds of 20 individuals (10 of each sex) were obtained from plants raised from wild-collected seeds. Käfer et al., 2021
20
Library Title Platform Total Base VCF File
SRR15206985 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 female plant with flower buds from France: Lyon, Amb26 ILLUMINA 6138789709 bp
SRR15206986 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 male plant with flower buds from France: Lyon, Amb21 ILLUMINA 6356015521 bp
SRR15206987 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 male plant with flower buds from France: Lyon, Amb20 ILLUMINA 7941924719 bp
SRR15206988 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 female plant with flower buds from France: Lyon, Amb19 ILLUMINA 7278246951 bp
SRR15206989 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 male plant with flower buds from France: Lyon, Amb18 ILLUMINA 5084528680 bp
SRR15206990 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 female plant with flower buds from France: Lyon, Amb16 ILLUMINA 6773669950 bp
SRR15206991 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 female plant with flower buds from France: Lyon, Amb15 ILLUMINA 6801957105 bp
SRR15206992 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 male plant with flower buds from France: Lyon, Amb14 ILLUMINA 7272251892 bp
SRR15206993 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 male plant with flower buds from France: Lyon, Amb57 ILLUMINA 6478569978 bp
SRR15206994 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 male plant with flower buds from France: Lyon, Amb45 ILLUMINA 5646154532 bp
SRR15206995 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 female plant with flower buds from France: Lyon, Amb38 ILLUMINA 5462193179 bp
SRR15206996 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 female plant with flower buds from France: Lyon, Amb35 ILLUMINA 8947822381 bp
SRR15206997 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 female plant with flower buds from France: Lyon, Amb34 ILLUMINA 5828270477 bp
SRR15206998 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 male plant with flower buds from France: Lyon, Amb33 ILLUMINA 5769629338 bp
SRR15206999 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 male plant with flower buds from France: Lyon, Amb32 ILLUMINA 5627685740 bp
SRR15207000 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 male plant with flower buds from France: Lyon, Amb31 ILLUMINA 6862055871 bp
SRR15207001 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 female plant with flower buds from France: Lyon, Amb30 ILLUMINA 7166848163 bp
SRR15207002 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 female plant with flower buds from France: Lyon, Amb29 ILLUMINA 5869243381 bp
SRR15207003 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 male plant with flower buds from France: Lyon, Amb11 ILLUMINA 6316024927 bp
SRR15207004 RNA-Seq of Amborella trichopoda: 5 years approximately stages 5 and 6 according to Buzgo et al 2004 female plant with flower buds from France: Lyon, Amb13 ILLUMINA 8430608757 bp
PRJNA788337 Laser-microdissected female flower tissues from Amborella trichopoda. -
15
Library Title Platform Total Base VCF File
SRR17211478 RNA-Seq of Amborella trichopoda: female flower late stage 7 stigmatic crest from New Caledonia, AAAD, StgCrest_LS7R1 ILLUMINA 3583598246 bp
SRR17211479 RNA-Seq of Amborella trichopoda: female flower late stage 7 ovule from New Caledonia, AAAE, ovule_LS7R3 ILLUMINA 4381721354 bp
SRR17211480 RNA-Seq of Amborella trichopoda: female flower late stage 7 ovule from New Caledonia, AAAC, ovule_LS7R2 ILLUMINA 4584240961 bp
SRR17211481 RNA-Seq of Amborella trichopoda: female flower late stage 7 ovule from New Caledonia, AAAA, ovule_LS7R1 ILLUMINA 5136356308 bp
SRR17211482 RNA-Seq of Amborella trichopoda: female flower late stage 7 ovary wall from New Caledonia, AAAF, Ovary_LS7R3 ILLUMINA 5049378782 bp
SRR17211483 RNA-Seq of Amborella trichopoda: female flower late stage 7 ovary wall from New Caledonia, AAAN, Ovary_LS7R2 ILLUMINA 6637537227 bp
SRR17211484 RNA-Seq of Amborella trichopoda: female flower late stage 7 ovary wall from New Caledonia, AAAB, Ovary_LS7R1 ILLUMINA 4088102355 bp
SRR17211485 RNA-Seq of Amborella trichopoda: female flower stage 5-6 carpel from New Caledonia, AAAH, Carpel_S5_6R3 ILLUMINA 7083773888 bp
SRR17211486 RNA-Seq of Amborella trichopoda: female flower stage 5-6 tepal from New Caledonia, AAAJ, Tepal_S5_6R3 ILLUMINA 4917047256 bp
SRR17211487 RNA-Seq of Amborella trichopoda: female flower stage 5-6 tepal from New Caledonia, AAAI, Tepal_S5_6R2 ILLUMINA 5487169893 bp
SRR17211488 RNA-Seq of Amborella trichopoda: female flower stage 5-6 tepal from New Caledonia, AAAO, Tepal_S5_6R1 ILLUMINA 6397036110 bp
SRR17211489 RNA-Seq of Amborella trichopoda: female flower late stage 7 stigmatic crest from New Caledonia, AAAL, StgCrest_LS7R3 ILLUMINA 4647932489 bp
SRR17211490 RNA-Seq of Amborella trichopoda: female flower late stage 7 stigmatic crest from New Caledonia, AAAK, StgCrest_LS7R2 ILLUMINA 5021398541 bp
SRR17211491 RNA-Seq of Amborella trichopoda: female flower stage 5-6 carpel from New Caledonia, AAAG, Carpel_S5_6R2 ILLUMINA 5081764758 bp
SRR17211492 RNA-Seq of Amborella trichopoda: female flower stage 5-6 carpel from New Caledonia, AAAM, Carpel_S5_6R1 ILLUMINA 5621587212 bp

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