Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA295548 Fortunella hindsii ovule transcriptome of polyembryonic and monoembryonic accessions. -
8
Library Title Platform Total Base VCF File
SRR2837835 RNA-Seq of Citrus hindsii:three years old plant with anthesis stage A polyembryony ovule from China:Fujian Province, PL_A_14, QL ILLUMINA 5867128200 bp
SRR2839112 RNA-Seq of Citrus hindsii:three years old plant with anthesis stage B polyembryony ovule from China:Fujian Province, PL_B_13, QL ILLUMINA 5143418400 bp
SRR2839113 RNA-Seq of Citrus hindsii:three years old plant with anthesis stage B polyembryony ovule from China:Fujian Province, PL_B_14, QL ILLUMINA 5681116200 bp
SRR2839114 RNA-Seq of Citrus hindsii:three years old plant with anthesis stage A monoembryony ovule from China:Fujian Province, MN_A_13, LT ILLUMINA 5196974400 bp
SRR2839115 RNA-Seq of Citrus hindsii:three years old plant with anthesis stage A monoembryony ovule from China:Fujian Province, MN_A_14, LT ILLUMINA 5765108600 bp
SRR2839116 RNA-Seq of Citrus hindsii:three years old plant with anthesis stage B monoembryony ovule from China:Fujian Province, MN_B_13, LT ILLUMINA 5592833400 bp
SRR2839118 RNA-Seq of Citrus hindsii:three years old plant with anthesis stage B monoembryony ovule from China:Fujian Province, MN_B_14, LT ILLUMINA 5561662200 bp
SRR2837275 RNA-Seq of Citrus hindsii:three years old plant with anthesis stage A polyembryony ovule from China:Fujian Province, PL_A_13, QL ILLUMINA 6982632400 bp
PRJNA385912 Two lines of citrus callus overexpressing csi-miR156a were compared with two that from wild type at 40 and 60 DAI, respectively. Long et al., 2018
8
Library Title Platform Total Base VCF File
SRR5519011 RNA-Seq of Citrus hindsii:overexpressing csi-miR156a callus without somatic embryos presence during 40 days after somatic embryos induction, GSM2610028 ILLUMINA 3692474000 bp
SRR5519012 RNA-Seq of Citrus hindsii:overexpressing csi-miR156a callus without somatic embryos presence during 40 days after somatic embryos induction, GSM2610029 ILLUMINA 3988115000 bp
SRR5519013 RNA-Seq of Citrus hindsii:overexpressing csi-miR156a callus with somatic embryos presence during 60 days after somatic embryos induction, GSM2610030 ILLUMINA 3876527750 bp
SRR5519014 RNA-Seq of Citrus hindsii:overexpressing csi-miR156a callus with somatic embryos presence during 60 days after somatic embryos induction, GSM2610031 ILLUMINA 4138183500 bp
SRR5519015 RNA-Seq of Citrus hindsii:wild type callus without somatic embryos presence during 40 days after somatic embryos induction, GSM2610032 ILLUMINA 3551064500 bp
SRR5519016 RNA-Seq of Citrus hindsii:wild type callus without somatic embryos presence during 40 days after somatic embryos induction, GSM2610033 ILLUMINA 3389162500 bp
SRR5519017 RNA-Seq of Citrus hindsii:wild type callus with somatic embryos presence during 60 days after somatic embryos induction, GSM2610034 ILLUMINA 3964143500 bp
SRR5519018 RNA-Seq of Citrus hindsii:wild type callus with somatic embryos presence during 60 days after somatic embryos induction, GSM2610035 ILLUMINA 4160579500 bp
PRJNA497956 The transcriptome of different tissues from Fortunella hindsii Zhu et al., 2019
23
Library Title Platform Total Base VCF File
SRR9050977 RNA-Seq of Citrus hindsii:young plant with 40 days immature fruit from China, Hongkong kumquat, 40 days immature fruit ILLUMINA 6538378800 bp
SRR9050984 RNA-Seq of Citrus hindsii:young plant with 40 days immature fruit from China, Hongkong kumquat, 40 days immature fruit ILLUMINA 8519829000 bp
SRR9051106 RNA-Seq of Citrus hindsii:young plant with 80 days immature fruit from China, Hongkong kumquat, 80 days immature fruit ILLUMINA 7394882400 bp
SRR9051170 RNA-Seq of Citrus hindsii:young plant with 80 days immature fruit from China, Hongkong kumquat, 80 days immature fruit ILLUMINA 6505416900 bp
SRR9051239 RNA-Seq of Citrus hindsii:mature plant with yellow-mature fruit from China, Hongkong kumquat, yellow-mature fruit ILLUMINA 6653077200 bp
SRR9051240 RNA-Seq of Citrus hindsii:mature plant with yellow-mature fruit from China, Hongkong kumquat, yellow-mature fruit ILLUMINA 7553576100 bp
SRR9051254 RNA-Seq of Citrus hindsii:mature plant with red-mature fruit from China, Hongkong kumquat, red-mature fruit ILLUMINA 9115943100 bp
SRR9051356 RNA-Seq of Citrus hindsii:mature plant with red-mature fruit from China, Hongkong kumquat, red-mature fruit ILLUMINA 9420345600 bp
SRR9044092 RNA-Seq of Citrus hindsii:mature plant with blossomed flower from China, Hongkong kumquat, blossomed flower ILLUMINA 27300967800 bp
SRR9044180 RNA-Seq of Citrus hindsii:mature plant with blossomed flower from China, Hongkong kumquat, blossomed flower ILLUMINA 19614128400 bp
SRR9028958 RNA-Seq of Citrus hindsii:mature plant with shoot from China, Hongkong kumquat, shoot ILLUMINA 6325828500 bp
SRR9029104 RNA-Seq of Citrus hindsii:mature plant with shoot from China, Hongkong kumquat, shoot ILLUMINA 7138664700 bp
SRR9031914 RNA-Seq of Citrus hindsii:mature plant with 24-hours flower bud from China, Hongkong kumquat, 24-hours flower bud ILLUMINA 8946273900 bp
SRR9032266 RNA-Seq of Citrus hindsii:mature plant with 24-hours flower bud from China, Hongkong kumquat, 24-hours flower bud ILLUMINA 8940287700 bp
SRR9008960 RNA-Seq of Citrus hindsii:mature plant with root from China, Hongkong kumquat, Root ILLUMINA 6983081100 bp
SRR9008962 RNA-Seq of Citrus hindsii:mature plant with root from China, Hongkong kumquat, Root ILLUMINA 6465706200 bp
SRR9008983 RNA-Seq of Citrus hindsii:mature plant with stem from China, Hongkong kumquat, stem ILLUMINA 6441898800 bp
SRR9016287 RNA-Seq of Citrus hindsii:mature plant with leaf from China, Hongkong kumquat, leaf ILLUMINA 8653448400 bp
SRR9016368 RNA-Seq of Citrus hindsii:mature plant with leaf from China, Hongkong kumquat, leaf ILLUMINA 6214487100 bp
SRR9037536 RNA-Seq of Citrus hindsii:mature plant with 4 days-5 days flower bud from China, Hongkong kumquat, 4 day-5day flower bud ILLUMINA 9123995700 bp
SRR9037765 RNA-Seq of Citrus hindsii:mature plant with 4 days-5 days flower bud from China, Hongkong kumquat, 4 day-5day flower bud ILLUMINA 8919425700 bp
SRR8988648 RNA-Seq of Citrus hindsii:young plant with seedling from China, Hongkong kumquat, YM ILLUMINA 6608099400 bp
SRR8988676 RNA-Seq of Citrus hindsii:young plant with seedling from China, Hongkong kumquat, YM ILLUMINA 5967849000 bp
PRJNA735863 Citrus hindsii or Fortunella hindsii, also named hongkong kumquat and mini citrus. Wang et al., 2022
12
Library Title Platform Total Base VCF File
SRR14759209 RNA-Seq of Citrus hindsii:7 days before flowering biological replicate 1 plant with ovules from China:Jiangxi, apomixis, PLB1, DB ILLUMINA 5100252110 bp
SRR14759210 RNA-Seq of Citrus hindsii:7 days after flowering biological replicate 3 plant with ovules from China:Jiangxi, apomixis, PLA3, DB ILLUMINA 8201064458 bp
SRR14759211 RNA-Seq of Citrus hindsii:7 days after flowering biological replicate 2 plant with ovules from China:Jiangxi, apomixis, PLA2, DB ILLUMINA 5811850076 bp
SRR14759212 RNA-Seq of Citrus hindsii:7 days after flowering biological replicate 1 plant with ovules from China:Jiangxi, apomixis, PLA1, DB ILLUMINA 6885206714 bp
SRR14759213 RNA-Seq of Citrus hindsii:7 days before flowering biological replicate 3 plant with ovules from China:Guangdong, sexual reproduction, MNB3, PN ILLUMINA 8459423910 bp
SRR14759214 RNA-Seq of Citrus hindsii:7 days before flowering biological replicate 2 plant with ovules from China:Guangdong, sexual reproduction, MNB2, PN ILLUMINA 5515077322 bp
SRR14759215 RNA-Seq of Citrus hindsii:7 days before flowering biological replicate 1 plant with ovules from China:Guangdong, sexual reproduction, MNB1, PN ILLUMINA 5541940144 bp
SRR14759216 RNA-Seq of Citrus hindsii:7 days after flowering biological replicate 3 plant with ovules from China:Guangdong, sexual reproduction, MNA3, PN ILLUMINA 8130525500 bp
SRR14759219 RNA-Seq of Citrus hindsii:7 days before flowering biological replicate 3 plant with ovules from China:Jiangxi, apomixis, PLB3, DB ILLUMINA 8988711586 bp
SRR14759220 RNA-Seq of Citrus hindsii:7 days before flowering biological replicate 2 plant with ovules from China:Jiangxi, apomixis, PLB2, DB ILLUMINA 5629835400 bp
SRR14759221 RNA-Seq of Citrus hindsii:7 days after flowering biological replicate 2 plant with ovules from China:Guangdong, sexual reproduction, MNA2, PN ILLUMINA 5699689262 bp
SRR14759222 RNA-Seq of Citrus hindsii:7 days after flowering biological replicate 1 plant with ovules from China:Guangdong, sexual reproduction, MNA1, PN ILLUMINA 5123139002 bp
PRJNA827480 RNA-Seq data in anther and style tissues of 'DB02' and 'PN02' Hongkong kumquat -
4
Library Title Platform Total Base VCF File
SRR25423021 RNA-Seq of Citrus hindsii:RT treatment before anthesis plant with fiower style fromChina: Guangdong\, Puning, PN02' Hongkong kumquat, RS_PN02-S ILLUMINA 20347242157 bp
SRR25423022 RNA-Seq of Citrus hindsii:RT treatment before anthesis plant with fiower anther fromChina: Guangdong\, Puning, PN02' Hongkong kumquat, RS_PN02-A ILLUMINA 19763509875 bp
SRR25423023 RNA-Seq of Citrus hindsii:RT treatment before anthesis plant with fiower style fromChina: Jiangxi\, Dingnan, DB02' Hongkong kumquat, RS_DB02-S ILLUMINA 19224312523 bp
SRR25423024 RNA-Seq of Citrus hindsii:RT treatment before anthesis plant with fiower anther fromChina: Jiangxi\, Dingnan, DB02' Hongkong kumquat, RS_DB02-A ILLUMINA 22549949494 bp
PRJNA894942 Evolutionary dynamics of alternative splicing in citrus revealed by Nanopore RNAseq Hu et al., 2022
2
Library Title Platform Total Base VCF File
SRR22063089 RNA-Seq of Citrus hindsii:leaf from China, SAMN31476728, 8 OXFORD_NANOPORE 5718165027 bp
SRR22063096 RNA-Seq of Citrus hindsii:leaf from China, SAMN31476728, 17 ILLUMINA 6702345000 bp

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