Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
Others

Project

Bioproject Description Publication GVCF File Library Num.
PRJNA703772 Epigenome and Transcriptome study of Bruguiera gymnorhiza Miryeganeh et al., 2021
25
Library Title Platform Total Base VCF File
SRR14055494 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Sample8_RNA_Bruguiera ILLUMINA 8445712797 bp
SRR14055495 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Sample_9_RNA_Bruguiera ILLUMINA 9053236090 bp
SRR14055663 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bruguiera_RNA_Sample10 ILLUMINA 9796600110 bp
SRR14055887 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bruguiera_RNA_Sample_11 ILLUMINA 7800768904 bp
SRR14055959 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bruguiera_RNA_Sample_13 ILLUMINA 8877022204 bp
SRR14116706 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S14 ILLUMINA 11112091801 bp
SRR14116708 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S15 ILLUMINA 7152382508 bp
SRR14116709 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S16 ILLUMINA 6528480168 bp
SRR14116710 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S17 ILLUMINA 6020938685 bp
SRR14116711 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S18 ILLUMINA 7159553164 bp
SRR14116712 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S19 ILLUMINA 7212438257 bp
SRR14116725 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S22 ILLUMINA 11190268516 bp
SRR14116726 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S21 ILLUMINA 10347819208 bp
SRR14116727 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S20 ILLUMINA 10003976125 bp
SRR14116728 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S23 ILLUMINA 11851494209 bp
SRR14116729 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S24 ILLUMINA 10973715035 bp
SRR14116730 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Bru_RNA_S25 ILLUMINA 10218987013 bp
SRR17035307 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, RNA_Sample12 ILLUMINA 8297153910 bp
SRR13860723 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, RNA_S3_B.gymnorhiza ILLUMINA 6692105209 bp
SRR13860795 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, RNA_S4_B.gymnorhiza ILLUMINA 5139170118 bp
SRR13860402 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, Sample1_B. gymnorhiza ILLUMINA 8370059879 bp
SRR13860403 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, RNA_Sample2_B. gymnorhiza ILLUMINA 8423744514 bp
SRR13860807 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, RNA_S5_B.gymnorhiza ILLUMINA 6730725092 bp
SRR13861124 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, RNA_S6_ B.gymnorhiza ILLUMINA 9244391735 bp
SRR13900461 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan: Okinawa, RNA_sample7 ILLUMINA 7802042501 bp
PRJNA725949 In this study, Bruguiera gymnorrhiza was sequenced by 10x linked read and scaffolding by HI-C reads using HiRISE software -
1
Library Title Platform Total Base VCF File
SRR17360128 RNA-Seq of Bruguiera gymnorhiza: 15 years plant with leaf from Thailand: Ranong, BC-1 BGISEQ 24710048496 bp
PRJNA754249 De novo Transcriptome of Mangrove trees Miryeganeh et al., 2021
9
Library Title Platform Total Base VCF File
SRR17035337 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan:Okinawa, S5 ILLUMINA 18933678370 bp
SRR15497174 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan:Okinawa, S1 ILLUMINA 33559457913 bp
SRR15464825 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan:Okinawa, Bru_Oceanside2 ILLUMINA 12325979444 bp
SRR15464826 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan:Okinawa, Bru_Oceanside4 ILLUMINA 15219311408 bp
SRR15464827 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan:Okinawa, Bru_Oceanside6 ILLUMINA 17930986087 bp
SRR15464828 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan:Okinawa, Bru_riverside_8 ILLUMINA 20099394321 bp
SRR15464829 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan:Okinawa, Bru_riverside9 ILLUMINA 18647726642 bp
SRR15464830 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan:Okinawa, Bru_Oceanside7 ILLUMINA 16671253393 bp
SRR15464831 RNA-Seq of Bruguiera gymnorhiza: adult plant with leaf from Japan:Okinawa, Bru_Oceanside3 ILLUMINA 32106128245 bp
PRJNA817364 Mangrove Genome Project He et al., 2022
4
Library Title Platform Total Base VCF File
SRR18449627 RNA-Seq of Bruguiera gymnorhiza: mature plant with flower, Bgymnorhiza_flower ILLUMINA 12006362400 bp
SRR18449628 RNA-Seq of Bruguiera gymnorhiza: mature plant with fruit, Bgymnorhiza_fruit ILLUMINA 10320592200 bp
SRR18449629 RNA-Seq of Bruguiera gymnorhiza: mature plant with root, Bgymnorhiza_root ILLUMINA 11877096900 bp
SRR18449631 RNA-Seq of Bruguiera gymnorhiza: mature plant with leaf, Bgymnorhiza_leaf_s1 ILLUMINA 11976813000 bp
PRJNA880598 transcriptomics of the chilling stress response in Bruguiera gymnorhiza -
16
Library Title Platform Total Base VCF File
SRR21587555 RNA-Seq of Bruguiera gymnorhiza: seedling pre-chilling acclimation temperature of 28℃ treatment plant with leaf from China:Hainan, BG_P5 ILLUMINA 6802360500 bp
SRR21587556 RNA-Seq of Bruguiera gymnorhiza: seedling pre-chilling acclimation temperature of 28℃ treatment plant with leaf from China:Hainan, BG_P4 ILLUMINA 7314099300 bp
SRR21587557 RNA-Seq of Bruguiera gymnorhiza: seedling pre-chilling acclimation temperature of 28℃ treatment plant with leaf from China:Hainan, BG_P3 ILLUMINA 7022090100 bp
SRR21587558 RNA-Seq of Bruguiera gymnorhiza: seedling pre-chilling acclimation temperature of 28℃ treatment plant with leaf from China:Hainan, BG_P2 ILLUMINA 7258737900 bp
SRR21587559 RNA-Seq of Bruguiera gymnorhiza: seedling pre-chilling acclimation temperature of 28℃ treatment plant with leaf from China:Hainan, BG_P1 ILLUMINA 5874493200 bp
SRR21594641 RNA-Seq of Bruguiera gymnorhiza: seedling chilling at 5℃ treatment plant with leaf from China:Hainan, BG_C3 ILLUMINA 6981189600 bp
SRR21594642 RNA-Seq of Bruguiera gymnorhiza: seedling chilling at 5℃ treatment plant with leaf from China:Hainan, BG_C2 ILLUMINA 6425046900 bp
SRR21594643 RNA-Seq of Bruguiera gymnorhiza: seedling chilling at 5℃ treatment plant with leaf from China:Hainan, BG_C1 ILLUMINA 6305151600 bp
SRR21594644 RNA-Seq of Bruguiera gymnorhiza: seedling chilling at 15℃ treatment plant with leaf from China:Hainan, BG_LT3 ILLUMINA 6695791500 bp
SRR21594645 RNA-Seq of Bruguiera gymnorhiza: seedling chilling at 15℃ treatment plant with leaf from China:Hainan, BG_LT2 ILLUMINA 7067985900 bp
SRR21594646 RNA-Seq of Bruguiera gymnorhiza: seedling chilling at 15℃ treatment plant with leaf from China:Hainan, BG_LT1 ILLUMINA 7625875200 bp
SRR21599843 RNA-Seq of Bruguiera gymnorhiza: seedling post-chilling recovery at 28℃ treatment plant with leaf from China:Hainan, BG_R5 ILLUMINA 7544613000 bp
SRR21599844 RNA-Seq of Bruguiera gymnorhiza: seedling post-chilling recovery at 28℃ treatment plant with leaf from China:Hainan, BG_R4 ILLUMINA 7748798700 bp
SRR21599845 RNA-Seq of Bruguiera gymnorhiza: seedling post-chilling recovery at 28℃ treatment plant with leaf from China:Hainan, BG_R3 ILLUMINA 7711939500 bp
SRR21599846 RNA-Seq of Bruguiera gymnorhiza: seedling post-chilling recovery at 28℃ treatment plant with leaf from China:Hainan, BG_R2 ILLUMINA 7700067600 bp
SRR21599847 RNA-Seq of Bruguiera gymnorhiza: seedling post-chilling recovery at 28℃ treatment plant with leaf from China:Hainan, BG_R1 ILLUMINA 8504386800 bp

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