Omics-Seq

Project

Bioproject

Description

Publication

GVCF File

Library Num.

To understand the formation mechanism of high oil content in Chinese hickory embryos and the molecular mechanisms of other biological changes during seed maturation, the transcriptome sequencing has been performed.

Library	Title	Platform	Total Base
SRR13284119	RNA-Seq of Carya cathayensis: 120 days after pollination stage plant with embryo from China, S4_1	BGISEQ	6374234800 bp
SRR13284120	RNA-Seq of Carya cathayensis: 108 days after pollination stage plant with embryo from China, S3_3	BGISEQ	6620321000 bp
SRR13284121	RNA-Seq of Carya cathayensis: 108 days after pollination stage plant with embryo from China, S3_2	BGISEQ	6361800200 bp
SRR13284122	RNA-Seq of Carya cathayensis: 108 days after pollination stage plant with embryo from China, S3_1	BGISEQ	6387374000 bp
SRR13284123	RNA-Seq of Carya cathayensis: 95 days after pollination stage plant with embryo from China, S2_3	BGISEQ	6608954000 bp
SRR13284124	RNA-Seq of Carya cathayensis: 95 days after pollination stage plant with embryo from China, S2_2	BGISEQ	6399226000 bp
SRR13284125	RNA-Seq of Carya cathayensis: 95 days after pollination stage plant with embryo from China, S2_1	BGISEQ	6624445200 bp
SRR13284126	RNA-Seq of Carya cathayensis: 83 days after pollination stage plant with embryo from China, S1_3	BGISEQ	6620075600 bp
SRR13284127	RNA-Seq of Carya cathayensis: 129 days after pollination stage plant with embryo from China, S5_3	BGISEQ	6407252800 bp
SRR13284128	RNA-Seq of Carya cathayensis: 129 days after pollination stage plant with embryo from China, S5_2	BGISEQ	6622399000 bp
SRR13284129	RNA-Seq of Carya cathayensis: 129 days after pollination stage plant with embryo from China, S5_1	BGISEQ	6431605400 bp
SRR13284130	RNA-Seq of Carya cathayensis: 120 days after pollination stage plant with embryo from China, S4_3	BGISEQ	6179991200 bp
SRR13284131	RNA-Seq of Carya cathayensis: 120 days after pollination stage plant with embryo from China, S4_2	BGISEQ	6439236400 bp
SRR13284132	RNA-Seq of Carya cathayensis: 83 days after pollination stage plant with embryo from China, S1_2	BGISEQ	6600587000 bp
SRR13284133	RNA-Seq of Carya cathayensis: 83 days after pollination stage plant with embryo from China, S1_1	BGISEQ	6397698400 bp

PRJNA793525

RNA-seq data of Fruit Development in Carya cathayensis

Chen et al., 2022

Library	Title	Platform	Total Base
SRR17460038	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate10, e120, E2020310	ILLUMINA	6907359000 bp
SRR17460039	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate9, e119, E2020309	ILLUMINA	7002071700 bp
SRR17460040	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate8, e118, E2020308	ILLUMINA	7167566100 bp
SRR17460041	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate7, e117, E2020307	ILLUMINA	6233597700 bp
SRR17460042	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate6, e116, E2020306	ILLUMINA	6208637100 bp
SRR17460043	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate5, e115, E2020305	ILLUMINA	7049658600 bp
SRR17460044	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate4, e114, E2020304	ILLUMINA	6265831500 bp
SRR17460045	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate24, p134, P2020324	ILLUMINA	6890279100 bp
SRR17460046	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate23, p133, P2020323	ILLUMINA	7326889800 bp
SRR17460047	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate22, p132, P2020322	ILLUMINA	6858115200 bp
SRR17460048	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate21, p131, P2020321	ILLUMINA	6940441500 bp
SRR17460049	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate3, e113, E2020303	ILLUMINA	6811199400 bp
SRR17460050	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate20, p130, P2020320	ILLUMINA	7015697100 bp
SRR17460051	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate19, p129, P2020319	ILLUMINA	6380887800 bp
SRR17460052	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate18, p128, P2020318	ILLUMINA	7116216900 bp
SRR17460053	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate17, p127, P2020317	ILLUMINA	6952954500 bp
SRR17460054	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate16, p126, P2020316	ILLUMINA	7582337700 bp
SRR17460055	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate15, p125, P2020315	ILLUMINA	7156059300 bp
SRR17460056	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate14, p124, P2020314	ILLUMINA	6771960900 bp
SRR17460057	RNA-Seq of Carya cathayensis: 30 years plant with pericarp from China: Hangzhou, replicate=biological replicate13, p123, P2020313	ILLUMINA	6897803400 bp
SRR17460058	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate12, e122, E2020312	ILLUMINA	7019577600 bp
SRR17460059	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate11, e121, E2020311	ILLUMINA	6290632200 bp
SRR17460060	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate2, e112, E2020302	ILLUMINA	7183207500 bp
SRR17460061	RNA-Seq of Carya cathayensis: 30 years plant with embryo from China: Hangzhou, replicate=biological replicate1, e111, E2020301	ILLUMINA	7617273600 bp

PRJNA810757

This study aimed at providing insight into the molecular mechanism of stigma color formation and changes in hickory stigma and its biological significance, which can provide explanation of the intrinsic mechanism of hickory floral organ development, and important theoretical guidance for future improvement of fruit yield enhancement.

Xing et al., 2022

Library	Title	Platform	Total Base
SRR18156067	RNA-Seq of Carya cathayensis: 38 days after female flower blooming stage plant with stigma from China, FLS3_1	BGISEQ	6405925200 bp
SRR18156068	RNA-Seq of Carya cathayensis: 36 days after female flower blooming stage plant with stigma from China, FLS2_3	BGISEQ	6353450700 bp
SRR18156072	RNA-Seq of Carya cathayensis: 46 days after female flower blooming stage plant with stigma from China, FLS4_3	BGISEQ	6401914800 bp
SRR18156073	RNA-Seq of Carya cathayensis: 46 days after female flower blooming stage plant with stigma from China, FLS4_2	BGISEQ	6374303100 bp
SRR18156074	RNA-Seq of Carya cathayensis: 34 days after female flower blooming stage plant with stigma from China, FLS1_2	BGISEQ	6326055000 bp
SRR18156075	RNA-Seq of Carya cathayensis: 34 days after female flower blooming stage plant with stigma from China, FLS1_1	BGISEQ	6342513600 bp
SRR18156064	RNA-Seq of Carya cathayensis: 46 days after female flower blooming stage plant with stigma from China, FLS4_1	BGISEQ	6350544000 bp
SRR18156065	RNA-Seq of Carya cathayensis: 38 days after female flower blooming stage plant with stigma from China, FLS3_3	BGISEQ	5862574800 bp
SRR18156066	RNA-Seq of Carya cathayensis: 38 days after female flower blooming stage plant with stigma from China, FLS3_2	BGISEQ	6375939600 bp
SRR18156069	RNA-Seq of Carya cathayensis: 36 days after female flower blooming stage plant with stigma from China, FLS2_2	BGISEQ	6346482000 bp
SRR18156070	RNA-Seq of Carya cathayensis: 36 days after female flower blooming stage plant with stigma from China, FLS2_1	BGISEQ	6295389600 bp
SRR18156071	RNA-Seq of Carya cathayensis: 34 days after female flower blooming stage plant with stigma from China, FLS1_3	BGISEQ	6276995100 bp

PRJNA946672

Transcriptome sequencing of the root tips (0-1 cm) of C. cathayensis seedlings treated with Al and/or melatonin for 6 hours. A total of 4 groups of treatment, 12 samples.

Library	Title	Platform	Total Base
SRR23917374	RNA-Seq of Carya cathayensis: aluminum treatment plant with root tip from China: Zhejiang province, Al2_1	ILLUMINA	7262231400 bp
SRR23917375	RNA-Seq of Carya cathayensis: aluminum treatment plant with root tip from China: Zhejiang province, Al1_1	ILLUMINA	7177256100 bp
SRR23917376	RNA-Seq of Carya cathayensis: aluminum and melatonin treatment plant with root tip from China: Zhejiang province, Al_MEL3_1	ILLUMINA	6539683500 bp
SRR23917377	RNA-Seq of Carya cathayensis: melatonin treatment plant with root tip from China: Zhejiang province, MEL3_1	ILLUMINA	6839339100 bp
SRR23917378	RNA-Seq of Carya cathayensis: melatonin treatment plant with root tip from China: Zhejiang province, MEL2_1	ILLUMINA	7030966500 bp
SRR23917379	RNA-Seq of Carya cathayensis: aluminum and melatonin treatment plant with root tip from China: Zhejiang province, Al_MEL2_1	ILLUMINA	6829036200 bp
SRR23917380	RNA-Seq of Carya cathayensis: melatonin treatment plant with root tip from China: Zhejiang province, MEL1_1	ILLUMINA	7649982300 bp
SRR23917381	RNA-Seq of Carya cathayensis: control plant with root tip from China: Zhejiang province, CK3_1	ILLUMINA	6887704800 bp
SRR23917382	RNA-Seq of Carya cathayensis: control plant with root tip from China: Zhejiang province, CK2_1	ILLUMINA	6889305600 bp
SRR23917383	RNA-Seq of Carya cathayensis: control plant with root tip from China: Zhejiang province, CK1_1	ILLUMINA	6785984400 bp
SRR23917384	RNA-Seq of Carya cathayensis: aluminum treatment plant with root tip from China: Zhejiang province, Al3_1	ILLUMINA	6782220900 bp
SRR23917385	RNA-Seq of Carya cathayensis: aluminum and melatonin treatment plant with root tip from China: Zhejiang province, Al_MEL1_1	ILLUMINA	6683446500 bp

Species Info.

Omics Data

Omics Analysis

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Omics Analysis

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