Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
Others

Project

Bioproject Description Publication GVCF File Library Num.
PRJNA1032043 Genome Sequence Assembly of Coffea arabica variety Geisha (UCDv1.0) -
10
Library Title Platform Total Base VCF File
SRR26586534 RNA-Seq of Coffea arabica: red pulp stage plant with fruit pulp from USA: Goleta\, CA, geisha, JFM-90J ILLUMINA 9912762600 bp
SRR26586545 RNA-Seq of Coffea arabica: pink pulp stage plant with fruit pulp from USA: Goleta\, CA, geisha, JFM-90I ILLUMINA 9512979900 bp
SRR26586556 RNA-Seq of Coffea arabica: mature flower stage plant with flower from USA: Goleta\, CA, geisha, JFM-90H ILLUMINA 9301147200 bp
SRR26586567 RNA-Seq of Coffea arabica: red bean stage plant with fruit from USA: Goleta\, CA, geisha, JFM-90G ILLUMINA 10165716900 bp
SRR26586579 RNA-Seq of Coffea arabica: developing berry bean 2mm stage plant with fruit from USA: Goleta\, CA, geisha, JFM-90D ILLUMINA 7886045700 bp
SRR26586590 RNA-Seq of Coffea arabica: flower bud 2 mm stage plant with flower from USA: Goleta\, CA, geisha, JFM-90C ILLUMINA 8571437100 bp
SRR26586623 RNA-Seq of Coffea arabica: pink bean stage plant with fruit from USA: Goleta\, CA, geisha, JFM-90F ILLUMINA 9736498500 bp
SRR26586634 RNA-Seq of Coffea arabica: green bean stage plant with fruit from USA: Goleta\, CA, geisha, JFM-90E ILLUMINA 8380757400 bp
SRR26586644 RNA-Seq of Coffea arabica: leaf stem from USA: Goleta\, CA, geisha, JFM-90B ILLUMINA 7742160000 bp
SRR26586645 RNA-Seq of Coffea arabica: young leaf from USA: Goleta\, CA, geisha, JFM-90A ILLUMINA 8304356400 bp
PRJNA743796 Transcriptome profiling of four different varieties of Coffea arabica provides insights into fruit color formation Hu et al., 2021
12
Library Title Platform Total Base VCF File
SRR15042539 RNA-Seq of Coffea arabica: mature plant with purple colored fruits from China: Baoshan, A20006049a 3 ILLUMINA 7924047900 bp
SRR15042540 RNA-Seq of Coffea arabica: mature plant with purple colored fruits from China: Baoshan, A20006049a 2 ILLUMINA 8240991600 bp
SRR15042541 RNA-Seq of Coffea arabica: mature plant with purple colored fruits from China: Baoshan, A20006049a 1 ILLUMINA 8291710800 bp
SRR15043326 RNA-Seq of Coffea arabica: mature plant with red colored fruits from China: Baoshan, A20006044a 3 ILLUMINA 8522541900 bp
SRR15043327 RNA-Seq of Coffea arabica: mature plant with red colored fruits from China: Baoshan, A20006044a 2 ILLUMINA 8104423500 bp
SRR15043328 RNA-Seq of Coffea arabica: mature plant with red colored fruits from China: Baoshan, A20006044a 1 ILLUMINA 8441135700 bp
SRR15043441 RNA-Seq of Coffea arabica: mature plant with orange colored fruits from China: Baoshan, A20006039a 3 ILLUMINA 8013097200 bp
SRR15043442 RNA-Seq of Coffea arabica: mature plant with orange colored fruits from China: Baoshan, A20006039a 2 ILLUMINA 8274298500 bp
SRR15043443 RNA-Seq of Coffea arabica: mature plant with orange colored fruits from China: Baoshan, A20006039a 1 ILLUMINA 8269470600 bp
SRR15042139 RNA-Seq of Coffea arabica: mature plant with yellow colored fruits from China: Baoshan, A20006034a 3 ILLUMINA 7609848000 bp
SRR15042140 RNA-Seq of Coffea arabica: mature plant with yellow colored fruits from China: Baoshan, A20006034a 2 ILLUMINA 7870960800 bp
SRR15042141 RNA-Seq of Coffea arabica: mature plant with yellow colored fruits from China: Baoshan, A20006034a 1 ILLUMINA 8297471400 bp
PRJNA851465 With the investigating purpose of flowering genes in Coffea arabica and their association with environmental conditions, we analyzed the gene expression profile of key flower regulators in samples collected in April and October from two Coffea arabia cv. (Acua and Catuai144) cultivated in two regions of the Minas Gerais, Brazil. -
24
Library Title Platform Total Base VCF File
SRR20203959 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Catuai IAC 144, P1, PCO ILLUMINA 2457072500 bp
SRR20203960 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Catuai IAC 144, P15, PCA ILLUMINA 2702830250 bp
SRR20203961 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Catuai IAC 144, P14, PCA ILLUMINA 2684243000 bp
SRR20203962 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Catuai IAC 144, P13, PCA ILLUMINA 2618930250 bp
SRR20203963 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Acaua, P6, PAO ILLUMINA 2695520250 bp
SRR20203964 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Acaua, P5, PAO ILLUMINA 3258925500 bp
SRR20203965 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Acaua, P4, PAO ILLUMINA 3033540250 bp
SRR20203966 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Catuai IAC 144, P9, VCO ILLUMINA 2370548500 bp
SRR20203967 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Catuai IAC 144, P8, VCO ILLUMINA 2356628750 bp
SRR20203968 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Catuai IAC 144, P7, VCO ILLUMINA 2964394250 bp
SRR20203969 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Catuai IAC 144, P21, VCA ILLUMINA 2700659750 bp
SRR20203970 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Acaua, P18, PAA ILLUMINA 2831831000 bp
SRR20203971 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Catuai IAC 144, P20, VCA ILLUMINA 2660235500 bp
SRR20203972 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Catuai IAC 144, P19, VCA ILLUMINA 2603414250 bp
SRR20203973 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Acaua, P12, VAO ILLUMINA 2565557000 bp
SRR20203974 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Acaua, P11, VAO ILLUMINA 2244681750 bp
SRR20203975 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Acaua, P10, VAO ILLUMINA 2601959750 bp
SRR20203976 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Acaua, P24, VAA ILLUMINA 2499044250 bp
SRR20203977 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Acaua, P23, VAA ILLUMINA 2698384000 bp
SRR20203978 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Varginha, Acaua, P22, VAA ILLUMINA 2926412250 bp
SRR20203979 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Catuai IAC 144, P3, PCO ILLUMINA 2479043000 bp
SRR20203980 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Catuai IAC 144, P2, PCO ILLUMINA 2949885000 bp
SRR20203981 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Acaua, P17, PAA ILLUMINA 2405644500 bp
SRR20203982 RNA-Seq of Coffea arabica: reproductive stage plant with leaves from Brazil: Minas Gerais\, Pirapora, Acaua, P16, PAA ILLUMINA 2696114500 bp
PRJNA923233 RNAseq from S4 (> 3mm and < 6mm) and S5 ( > 6mm and <10 mm) bud stages (Coffea arabica). -
8
Library Title Platform Total Base VCF File
SRR23060665 RNA-Seq of Coffea arabica: floral buds > 6 mm and < 10 mm from Brazil: UFLA, Siriema, S5_S_r2 ILLUMINA 4309418712 bp
SRR23060666 RNA-Seq of Coffea arabica: floral buds > 6 mm and < 10 mm from Brazil: UFLA, Siriema, S5_S_r1 ILLUMINA 4858331997 bp
SRR23060667 RNA-Seq of Coffea arabica: floral buds > 6 mm and < 10 mm from Brazil: UFLA, Catuai Red, S5_C_r2 ILLUMINA 4557012637 bp
SRR23060668 RNA-Seq of Coffea arabica: floral buds > 6 mm and < 10 mm from Brazil: UFLA, Catuai Red, S5_C_r1 ILLUMINA 4857305130 bp
SRR23060669 RNA-Seq of Coffea arabica: floral buds > 3mm and < 6mm late from Brazil: UFLA, Siriema, S4_S_r2 ILLUMINA 4425240765 bp
SRR23060670 RNA-Seq of Coffea arabica: floral buds > 3mm and < 6mm late from Brazil: UFLA, Siriema, S4_S_r1 ILLUMINA 4457835687 bp
SRR23060671 RNA-Seq of Coffea arabica: floral buds > 3mm and < 6mm late from Brazil: UFLA, Catuai Red, S4_C_r2 ILLUMINA 4915049153 bp
SRR23060672 RNA-Seq of Coffea arabica: floral buds > 3mm and < 6mm late from Brazil: UFLA, Catuai Red, S4_C_r1 ILLUMINA 5561740235 bp

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