| Bioproject |
Description |
Publication |
GVCF File |
Library Num. |
| PRJNA326818 |
Researchers study, as the first report on the transcriptome sequencing of pistachio, will not only provide plenty of informative data, but also paves the way for functional and comparative genomic studies on this major tree and other woody species to decipher the potential abiotic stress response mechanisms. |
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 |
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| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR3723193 |
RNA-Seq of Pistacia vera: 42 days plant with leaf\, Stem\, Root from Iran: Tehran, Sarakhs and Ghazvini, PV1 |
ILLUMINA |
39457994600 bp |
|
|
| PRJNA526975 |
Researchers provide a draft de novo genome of pistachio as well as large-scale genome resequencing. |
Zeng et al., 2019 |
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| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR8772752 |
RNA-Seq of Pistacia vera: leaf from Iran, Ohadi7, 31 |
ILLUMINA |
2080824300 bp |
|
| SRR8772753 |
RNA-Seq of Pistacia vera: leaf from Iran, Ohadi8, 32 |
ILLUMINA |
2063010300 bp |
|
| SRR8772754 |
RNA-Seq of Pistacia vera: root from Iran, Ohadi5, 29 |
ILLUMINA |
2041694700 bp |
|
| SRR8772755 |
RNA-Seq of Pistacia vera: root from Iran, Ohadi6, 30 |
ILLUMINA |
2038892700 bp |
|
| SRR8772756 |
RNA-Seq of Pistacia vera: leaf from Iran, Ohadi3, 27 |
ILLUMINA |
2002634400 bp |
|
| SRR8772757 |
RNA-Seq of Pistacia vera: root from Iran, Ohadi4, 28 |
ILLUMINA |
2084982900 bp |
|
| SRR8772758 |
RNA-Seq of Pistacia vera: leaf from Iran, Ohadi1, 25 |
ILLUMINA |
2082005100 bp |
|
| SRR8772759 |
RNA-Seq of Pistacia vera: leaf from Iran, Ohadi2, 26 |
ILLUMINA |
2042012700 bp |
|
| SRR8772778 |
RNA-Seq of Pistacia vera: root from Iran, Ohadi10, 34 |
ILLUMINA |
2033306100 bp |
|
| SRR8772779 |
RNA-Seq of Pistacia vera: leaf from Iran, Ohadi9, 33 |
ILLUMINA |
2073736200 bp |
|
| SRR8772780 |
RNA-Seq of Pistacia vera: root from Iran, Ohadi12, 36 |
ILLUMINA |
2090218200 bp |
|
| SRR8772781 |
RNA-Seq of Pistacia vera: root from Iran, Ohadi11, 35 |
ILLUMINA |
2082865800 bp |
|
|
| PRJNA623387 |
The analysis provides insights into the transcript changes between ON year and OFF year and shed light on the molecular mechanisms underlying the alternate bearing in the Italian pistachio cultivar Bianca. |
Benny et al., 2020 |
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| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR11490175 |
RNA-Seq of Pistacia vera: July OFF 1 stage bud 4 from Italy: Palermo, Bianca, S2_S5 |
ILLUMINA |
586985788 bp |
|
| SRR11490176 |
RNA-Seq of Pistacia vera: June ON 3 stage bud 3 from Italy: Palermo, Bianca, S2_S2 |
ILLUMINA |
3577845363 bp |
|
| SRR11490177 |
RNA-Seq of Pistacia vera: June ON 2 stage bud 2 from Italy: Palermo, Bianca, S2_S1 |
ILLUMINA |
2613627408 bp |
|
| SRR11490178 |
RNA-Seq of Pistacia vera: June ON 1 stage bud 1 from Italy: Palermo, Bianca, S2_S9 |
ILLUMINA |
1831834863 bp |
|
| SRR11490179 |
RNA-Seq of Pistacia vera: July OFF 3 stage bud 6 from Italy: Palermo, Bianca, S1_S4 |
ILLUMINA |
3177073511 bp |
|
| SRR11490180 |
RNA-Seq of Pistacia vera: July OFF 2 stage bud 5 from Italy: Palermo, Bianca, S1_S13 |
ILLUMINA |
2148111588 bp |
|
| SRR11490181 |
RNA-Seq of Pistacia vera: July OFF 1 stage bud 4 from Italy: Palermo, Bianca, S1_S7 |
ILLUMINA |
2585555425 bp |
|
| SRR11490182 |
RNA-Seq of Pistacia vera: July ON 3 stage bud 3 from Italy: Palermo, Bianca, S1_S12 |
ILLUMINA |
1616270373 bp |
|
| SRR11490183 |
RNA-Seq of Pistacia vera: July OFF3 stage bud 6 from Italy: Palermo, Bianca, S2_S6 |
ILLUMINA |
4385970182 bp |
|
| SRR11490184 |
RNA-Seq of Pistacia vera: July OFF 2 stage bud 5 from Italy: Palermo, Bianca, S2_S11 |
ILLUMINA |
1850485905 bp |
|
| SRR11490185 |
RNA-Seq of Pistacia vera: July ON 2 stage bud 2 from Italy: Palermo, Bianca, S1_S6 |
ILLUMINA |
3892213626 bp |
|
| SRR11490186 |
RNA-Seq of Pistacia vera: July ON 1 stage bud 1 from Italy: Palermo, Bianca, S1_S5 |
ILLUMINA |
1633452336 bp |
|
|
| PRJNA648340 |
The aim of the study is to develop genic SSR markers in Pistacia and to identify relationship between Pistacia species. |
Karcι et al., 2020 |
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| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR12324906 |
RNA-Seq of Pistacia vera: male bud from Turkey: Gaziantep, Atli, PV-Male-Bud-August |
ILLUMINA |
2190441600 bp |
|
| SRR12324907 |
RNA-Seq of Pistacia vera: male bud from Turkey: Gaziantep, Atli, PV-Male-Bud-March-2 |
ILLUMINA |
2164810200 bp |
|
| SRR12324908 |
RNA-Seq of Pistacia vera: male bud from Turkey: Gaziantep, Atli, PV-Male-Bud-March-1 |
ILLUMINA |
2177890400 bp |
|
| SRR12324909 |
RNA-Seq of Pistacia vera: kernel from Turkey: Gaziantep, Siirt, PV-Kernel-August |
ILLUMINA |
2237069800 bp |
|
| SRR12324910 |
RNA-Seq of Pistacia vera: female shoot from Turkey: Gaziantep, Siirt, PV-Female-shoot |
ILLUMINA |
2186089000 bp |
|
| SRR12324911 |
RNA-Seq of Pistacia vera: female leaf from Turkey: Gaziantep, Siirt, PV-Female-leaf |
ILLUMINA |
2292153000 bp |
|
| SRR12324912 |
RNA-Seq of Pistacia vera: female flower from Turkey: Gaziantep, Siirt, PV-Female-inflorescence |
ILLUMINA |
2198739600 bp |
|
| SRR12324913 |
RNA-Seq of Pistacia vera: female bud from Turkey: Gaziantep, Siirt, PV-Female-Bud-June |
ILLUMINA |
2146684400 bp |
|
| SRR12324914 |
RNA-Seq of Pistacia vera: whole nut from Turkey: Gaziantep, Siirt, PV-Whole-Nut-May |
ILLUMINA |
2226100400 bp |
|
| SRR12324915 |
RNA-Seq of Pistacia vera: whole nut from Turkey: Gaziantep, Siirt, PV-Whole-Nut-June |
ILLUMINA |
2135325200 bp |
|
| SRR12324916 |
RNA-Seq of Pistacia vera: nut pericarp from Turkey: Gaziantep, Siirt, PV-Nut-August |
ILLUMINA |
2276654400 bp |
|
| SRR12324917 |
RNA-Seq of Pistacia vera: male shoot from Turkey: Gaziantep, Atli, PV-Male-shoot |
ILLUMINA |
2214177600 bp |
|
| SRR12324918 |
RNA-Seq of Pistacia vera: male leaf from Turkey: Gaziantep, Atli, PV-Male-leaf |
ILLUMINA |
2206896800 bp |
|
| SRR12324919 |
RNA-Seq of Pistacia vera: male flower from Turkey: Gaziantep, Atli, PV-Male-inflorescence |
ILLUMINA |
2174623200 bp |
|
| SRR12324920 |
RNA-Seq of Pistacia vera: male bud from Turkey: Gaziantep, Atli, PV-Male-Bud-June |
ILLUMINA |
2157780000 bp |
|
| SRR12324921 |
RNA-Seq of Pistacia vera: female bud from Turkey: Gaziantep, Siirt, PV-Female-Bud-August |
ILLUMINA |
2162323800 bp |
|
| SRR12324922 |
RNA-Seq of Pistacia vera: female bud from Turkey: Gaziantep, Siirt, PV-Female-Bud-March |
ILLUMINA |
2330412800 bp |
|
|
| PRJNA680201 |
This study reported the first chromosome-level female and male reference genomes and use them to study pistachio domestication and the sex chromosomes evolution. |
Kafkas et al., 2023 |
|
|
| Library |
Title |
Platform |
Total Base |
VCF File |
| SRR13214158 |
RNA-Seq of Pistacia vera: male bud from Turkey: Gaziantep, RNAseq_Bulk_Male-P2-2 |
ILLUMINA |
8733391400 bp |
|
| SRR13214159 |
RNA-Seq of Pistacia vera: male bud from Turkey: Gaziantep, RNAseq_Bulk_Male-P2-1 |
ILLUMINA |
8965932000 bp |
|
| SRR13214160 |
RNA-Seq of Pistacia vera: male bud from Turkey: Gaziantep, RNAseq_Bulk_Male-P1-2 |
ILLUMINA |
8978630800 bp |
|
| SRR13214161 |
RNA-Seq of Pistacia vera: male bud from Turkey: Gaziantep, RNAseq_Bulk_Male-P1-1 |
ILLUMINA |
8734234000 bp |
|
| SRR13214162 |
RNA-Seq of Pistacia vera: female bud from Turkey: Gaziantep, RNAseq_Bulk_Female-P2-2 |
ILLUMINA |
9216041800 bp |
|
| SRR13214163 |
RNA-Seq of Pistacia vera: female bud from Turkey: Gaziantep, RNAseq_Bulk_Female-P2-1 |
ILLUMINA |
9215263400 bp |
|
| SRR13214166 |
RNA-Seq of Pistacia vera: female bud from Turkey: Gaziantep, RNAseq_Bulk_Female-P1-2 |
ILLUMINA |
9207591400 bp |
|
| SRR13214167 |
RNA-Seq of Pistacia vera: female bud from Turkey: Gaziantep, RNAseq_Bulk_Female-P1-1 |
ILLUMINA |
9191117600 bp |
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Species Info.
Omics Data
Seq. Analysis
Project
1