Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA314020 Identifying the genome-wide genetic variation between precocious trifoliate orange and its wild type and developing new markers for genetics research. Zhang et al., 2016
2
Library Title Platform Total Base VCF File
SRR3199131 RNA-Seq of Poncirus trifoliata: 2 years mutant plant with the terminal bud and the five following buds (the major node position for flower formation) from spring flushes, Citrus trifoliata, precocious trifoliate orange, GSM2078146 ILLUMINA 1200000000 bp
SRR3199132 RNA-Seq of Poncirus trifoliata: 2 years wildtype plant with the terminal bud and the five following buds (the major node position for flower formation) from spring flushes, Citrus trifoliata, normal trifoliate orange, GSM2078147 ILLUMINA 1200000000 bp
PRJNA329194 Genome-wide screening and characterization of long non-coding RNAs involved in flowering development of citrus (Poncirus trifoliata L. Raf.) by RNA sequencing. Wang et al., 2017
6
Library Title Platform Total Base VCF File
SRR3924377 RNA-Seq of Poncirus trifoliata: the terminal bud and the five following buds (the major node position for flower formation) from spring flushes, Citrus trifoliata, Precocious trifoliate orange, GSM2236267 ILLUMINA 11824049667 bp
SRR3924378 RNA-Seq of Poncirus trifoliata: the terminal bud and the five following buds (the major node position for flower formation) from spring flushes, Citrus trifoliata, Precocious trifoliate orange, GSM2236268 ILLUMINA 11962581159 bp
SRR3924379 RNA-Seq of Poncirus trifoliata: the terminal bud and the five following buds (the major node position for flower formation) from spring flushes, Citrus trifoliata, Precocious trifoliate orange, GSM2236269 ILLUMINA 11841392521 bp
SRR3924380 RNA-Seq of Poncirus trifoliata: the terminal bud and the five following buds (the major node position for flower formation) from spring flushes, Citrus trifoliata, Wild-type trifoliate orange, GSM2236270 ILLUMINA 11548113119 bp
SRR3924381 RNA-Seq of Poncirus trifoliata: the terminal bud and the five following buds (the major node position for flower formation) from spring flushes, Citrus trifoliata, Wild-type trifoliate orange, GSM2236271 ILLUMINA 11601519880 bp
SRR3924382 RNA-Seq of Poncirus trifoliata: the terminal bud and the five following buds (the major node position for flower formation) from spring flushes, Citrus trifoliata, Wild-type trifoliate orange, GSM2236272 ILLUMINA 11892579153 bp
PRJNA386941 Transcriptome analysis the citrus rootstocks of Ziyang xiangcheng (Citrus junos Sieb.) and Poncirus trifoliate (Poncirus trifoliata (L.) Raf.) under saline-alkali stress. -
2
Library Title Platform Total Base VCF File
SRR5572296 RNA-Seq of Poncirus trifoliata: 140 DAF stage root, Citrus trifoliata, Poncirus trifoliata, GSM2629828 BGISEQ 1149676750 bp
SRR5572297 RNA-Seq of Poncirus trifoliata: 140 DAF stage root, Citrus trifoliata, Poncirus trifoliata, GSM2629829 BGISEQ 1153635300 bp
PRJNA473568 Comprehensive analysis of transcriptomes reveals insight into the tolerance of Ziyang xiangcheng (Citrus junos Sieb. ex Tanaka) to alkaline stress. Wu et al., 2019
9
Library Title Platform Total Base VCF File
SRR7230845 RNA-Seq of Poncirus trifoliata: PH: 6.5 seedling with root, Citrus trifoliata, GSM3164098 ILLUMINA 6751681708 bp
SRR7230846 RNA-Seq of Poncirus trifoliata: PH: 6.5 seedling with root, Citrus trifoliata, GSM3164099 ILLUMINA 7515863834 bp
SRR7230847 RNA-Seq of Poncirus trifoliata: PH: 6.5 seedling with root, Citrus trifoliata, GSM3164100 ILLUMINA 6584522044 bp
SRR7230848 RNA-Seq of Poncirus trifoliata: PH: 8 seedling with root, Citrus trifoliata, GSM3164101 ILLUMINA 8172108164 bp
SRR7230849 RNA-Seq of Poncirus trifoliata: PH: 8 seedling with root, Citrus trifoliata, GSM3164102 ILLUMINA 7580498202 bp
SRR7230850 RNA-Seq of Poncirus trifoliata: PH: 8 seedling with root, Citrus trifoliata, GSM3164103 ILLUMINA 8259296402 bp
SRR7230851 RNA-Seq of Poncirus trifoliata: PH: 9.5 seedling with root, Citrus trifoliata, GSM3164104 ILLUMINA 6772572392 bp
SRR7230852 RNA-Seq of Poncirus trifoliata: PH: 9.5 seedling with root, Citrus trifoliata, GSM3164105 ILLUMINA 7772137760 bp
SRR7230853 RNA-Seq of Poncirus trifoliata: PH: 9.5 seedling with root, Citrus trifoliata, GSM3164106 ILLUMINA 7481607548 bp
PRJNA487128 Citrus trifoliata cultivar: Trifoliate orange Transcriptome or Gene expression. Ke et al., 2019
24
Library Title Platform Total Base VCF File
SRR12595783 RNA-Seq of Poncirus trifoliata: mature root from China, Citrus trifoliata, ZR, ZR_RNA ILLUMINA 8748816600 bp
SRR12595784 RNA-Seq of Poncirus trifoliata: mature root from China, Citrus trifoliata, ZR, ZR_RNA ILLUMINA 9142192500 bp
SRR12595785 RNA-Seq of Poncirus trifoliata: mature root from China, Citrus trifoliata, ZR, ZR_RNA ILLUMINA 7631387400 bp
SRR12589315 RNA-Seq of Poncirus trifoliata: mature leaf from China, Citrus trifoliata, ZY, ZY_mRNA ILLUMINA 9091856700 bp
SRR12589316 RNA-Seq of Poncirus trifoliata: mature leaf from China, Citrus trifoliata, ZY, ZY_mRNA ILLUMINA 8581163700 bp
SRR12589317 RNA-Seq of Poncirus trifoliata: mature leaf from China, Citrus trifoliata, ZY, ZY_mRNA ILLUMINA 9254192700 bp
SRR7734392 RNA-Seq of Poncirus trifoliata: 7 days before flowering flowers early-stage ovules from China, Citrus trifoliata, ZKBE, ZKBE ILLUMINA 10372018800 bp
SRR7734562 RNA-Seq of Poncirus trifoliata: 7 days before flowering flowers early-stage ovules from China, Citrus trifoliata, ZKBE, ZKBE ILLUMINA 11098728900 bp
SRR7743798 RNA-Seq of Poncirus trifoliata: young fruit from China, Citrus trifoliata, ZKYF, ZKYF ILLUMINA 11611986000 bp
SRR7743799 RNA-Seq of Poncirus trifoliata: young fruit from China, Citrus trifoliata, ZKYF, ZKYF ILLUMINA 10415368500 bp
SRR7743800 RNA-Seq of Poncirus trifoliata: mature fruit from China, Citrus trifoliata, ZKMF, ZKMF ILLUMINA 8885459100 bp
SRR7743826 RNA-Seq of Poncirus trifoliata: mature fruit from China, Citrus trifoliata, ZKMF, ZKMF ILLUMINA 11343926700 bp
SRR7744127 RNA-Seq of Poncirus trifoliata: mature fruit from China, Citrus trifoliata, ZKMF, ZKMF ILLUMINA 10511040000 bp
SRR7746657 RNA-Seq of Poncirus trifoliata: mature seed from China, Citrus trifoliata, ZKS, ZKS ILLUMINA 9096054600 bp
SRR7746658 RNA-Seq of Poncirus trifoliata: mature seed from China, Citrus trifoliata, ZKS, ZKS ILLUMINA 8787955800 bp
SRR7746659 RNA-Seq of Poncirus trifoliata: mature seed from China, Citrus trifoliata, ZKS, ZKS ILLUMINA 11251712700 bp
SRR7746670 RNA-Seq of Poncirus trifoliata: 7 days after flowering flowers late-stage ovules from China, Citrus trifoliata, ZKAE, ZKAE ILLUMINA 11152785000 bp
SRR7746924 RNA-Seq of Poncirus trifoliata: 7 days after flowering flowers late-stage ovules from China, Citrus trifoliata, ZKAE, ZKAE ILLUMINA 11499978600 bp
SRR7746952 RNA-Seq of Poncirus trifoliata: 7 days after flowering flowers late-stage ovules from China, Citrus trifoliata, ZKAE, ZKAE ILLUMINA 11592286200 bp
SRR7734593 RNA-Seq of Poncirus trifoliata: 7 days before flowering flowers early-stage ovules from China, Citrus trifoliata, ZKBE, ZKBE ILLUMINA 10049241600 bp
SRR7738121 RNA-Seq of Poncirus trifoliata: mature leaf from China, Citrus trifoliata, ZKL, ZKL ILLUMINA 11552175000 bp
SRR7743263 RNA-Seq of Poncirus trifoliata: mature leaf from China, Citrus trifoliata, ZKL, ZKL ILLUMINA 10729689300 bp
SRR7743303 RNA-Seq of Poncirus trifoliata: mature leaf from China, Citrus trifoliata, ZKL, ZKL ILLUMINA 11585568000 bp
SRR7743305 RNA-Seq of Poncirus trifoliata: young fruit from China, Citrus trifoliata, ZKYF, ZKYF ILLUMINA 10677756600 bp
PRJNA576788 This project aims at the mechanism of the hyperplasia of vascular bundle cells and the diversity of vein swelling or cracking symptoms problems. Zhou et al., 2019
6
Library Title Platform Total Base VCF File
SRR10256952 RNA-Seq of Poncirus trifoliata: 10 months hydroponic culture control leaf from China: Ganzhou, Citrus trifoliata, Poncirus trifoliata, CK-3 ILLUMINA 17961791100 bp
SRR10256953 RNA-Seq of Poncirus trifoliata: 10 months hydroponic culture control leaf from China: Ganzhou, Citrus trifoliata, Poncirus trifoliata, CK-2 ILLUMINA 19246396800 bp
SRR10256954 RNA-Seq of Poncirus trifoliata: 10 months hydroponic culture control leaf from China: Ganzhou, Citrus trifoliata, Poncirus trifoliata, CK-1 ILLUMINA 15952557000 bp
SRR10256955 RNA-Seq of Poncirus trifoliata: 10 months hydroponic culture 12 weeks boron deficiency stress leaf from China: Ganzhou, Citrus trifoliata, Poncirus trifoliata, BD-3 ILLUMINA 14696434200 bp
SRR10256956 RNA-Seq of Poncirus trifoliata: 10 months hydroponic culture 12 weeks boron deficiency stress leaf from China: Ganzhou, Citrus trifoliata, Poncirus trifoliata, BD-2 ILLUMINA 13634763900 bp
SRR10256957 RNA-Seq of Poncirus trifoliata: 10 months hydroponic culture 12 weeks boron deficiency stress leaf from China: Ganzhou, Citrus trifoliata, Poncirus trifoliata, BD-1 ILLUMINA 19320700200 bp
PRJNA776912 In this study, transcriptome sequencing of flavedo tissues at different stages of fruit development was performed to perform co-expression analysis. Yang et al., 2022
12
Library Title Platform Total Base VCF File
SRR16685336 RNA-Seq of Poncirus trifoliata: 180 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-180-3 ILLUMINA 7411781100 bp
SRR16685337 RNA-Seq of Poncirus trifoliata: 180 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-180-2 ILLUMINA 7118583000 bp
SRR16685338 RNA-Seq of Poncirus trifoliata: 180 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-180-1 ILLUMINA 6782988900 bp
SRR16685339 RNA-Seq of Poncirus trifoliata: 150 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-150-3 ILLUMINA 6350638800 bp
SRR16685340 RNA-Seq of Poncirus trifoliata: 150 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-150-2 ILLUMINA 6922393500 bp
SRR16685341 RNA-Seq of Poncirus trifoliata: 150 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-150-1 ILLUMINA 7982214900 bp
SRR16685342 RNA-Seq of Poncirus trifoliata: 120 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-120-3 ILLUMINA 6561106800 bp
SRR16685344 RNA-Seq of Poncirus trifoliata: 120 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-120-2 ILLUMINA 6872676600 bp
SRR16685345 RNA-Seq of Poncirus trifoliata: 120 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-120-1 ILLUMINA 7286813100 bp
SRR16685346 RNA-Seq of Poncirus trifoliata: 90 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-90-3 ILLUMINA 7072038600 bp
SRR16685347 RNA-Seq of Poncirus trifoliata: 90 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-90-2 ILLUMINA 7040027100 bp
SRR16685348 RNA-Seq of Poncirus trifoliata: 90 days after flowering fruit flavedo from Huazhong Agricultural university China: Wuhan, Citrus trifoliata, ZK, ZK-90-1 ILLUMINA 7055818500 bp
PRJNA806490 Transcriptome profiling of Poncirus trifoliata, a Diaphorina citri tolerant Aurantioideae species, reveals candidate genes and events that potentially connected to insect resistance. -
15
Library Title Platform Total Base VCF File
SRR18002776 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T10, CK14d-1 ILLUMINA 6178409890 bp
SRR18002778 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T08, S7d-2 ILLUMINA 6784063772 bp
SRR18002779 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T07, S7d-1 ILLUMINA 7206251272 bp
SRR18002780 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T06, CK7d-3 ILLUMINA 6136060704 bp
SRR18002782 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T04, CK7d-1 ILLUMINA 6486655964 bp
SRR18002783 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T03, CK0d-3 ILLUMINA 6772469048 bp
SRR18002784 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T15, S14d-3 ILLUMINA 6229087954 bp
SRR18002785 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T14, S14d-2 ILLUMINA 6152747490 bp
SRR18002786 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T13, S14d-1 ILLUMINA 6988581466 bp
SRR18002787 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T12, CK14d-3 ILLUMINA 6390314176 bp
SRR18002788 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T11, CK14d-2 ILLUMINA 8171870236 bp
SRR18002789 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T02, CK0d-2 ILLUMINA 7953683678 bp
SRR18002790 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T01, CK0d-1 ILLUMINA 6688455936 bp
SRR18002777 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T09, S7d-3 ILLUMINA 7576122952 bp
SRR18002781 RNA-Seq of Poncirus trifoliata: leaves from China: Ganzhou, Citrus trifoliata, YA-1, AD939-01-T05, CK7d-2 ILLUMINA 6576112278 bp
PRJNA894942 Evolutionary dynamics of alternative splicing in citrus revealed by Nanopore RNAseq. Hu et al., 2023
1
Library Title Platform Total Base VCF File
SRR22063088 RNA-Seq of Poncirus trifoliata: young leaf from China, Citrus trifoliata, Poncirus trifoliata OXFORD_NANOPORE 4829286718 bp

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