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Omics Data

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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA1060902 RNA-seq of different tissues during rubber seed germination process Hu et al., 2024
881
Library Title Platform Total Base VCF File
SRR27419269 RNA-Seq of Hevea brasiliensis: seedling emergence plant with plumule from China:Danzhou, GT-1, 87, D_5_3.R1 ILLUMINA 6471997712 bp
SRR27419270 RNA-Seq of Hevea brasiliensis: seedling emergence plant with plumule from China:Danzhou, GT-1, 85, D_5_2.R1 ILLUMINA 7674431852 bp
SRR27419271 RNA-Seq of Hevea brasiliensis: seedling emergence plant with plumule from China:Danzhou, GT-1, 83, D_5_1.R1 ILLUMINA 7226040372 bp
SRR27419272 RNA-Seq of Hevea brasiliensis: seedling emergence plant with cotyledon from China:Danzhou, GT-1, 67, D_2_1.R1 ILLUMINA 7698660708 bp
SRR27419273 RNA-Seq of Hevea brasiliensis: seedling emergence plant with radicle from China:Danzhou, GT-1, 81, D_4_3.R1 ILLUMINA 6885756738 bp
SRR27419274 RNA-Seq of Hevea brasiliensis: seed imbibition plant with cotyledon from China:Danzhou, GT-1, 9, A_2_2.R1 ILLUMINA 7510270088 bp
SRR27419275 RNA-Seq of Hevea brasiliensis: seedling emergence plant with radicle from China:Danzhou, GT-1, 79, D_4_2.R1 ILLUMINA 7056031284 bp
SRR27419276 RNA-Seq of Hevea brasiliensis: seedling emergence plant with radicle from China:Danzhou, GT-1, 77, D_4_1.R1 ILLUMINA 8241406954 bp
SRR27419277 RNA-Seq of Hevea brasiliensis: seedling emergence plant with embryonic axis from China:Danzhou, GT-1, 75, D_3_3.R1 ILLUMINA 7463557030 bp
SRR27419278 RNA-Seq of Hevea brasiliensis: seedling emergence plant with embryonic axis from China:Danzhou, GT-1, 73, D_3_2.R1 ILLUMINA 6997256346 bp
SRR27419279 RNA-Seq of Hevea brasiliensis: seedling emergence plant with cotyledon from China:Danzhou, GT-1, 71, D_3_1.R1 ILLUMINA 7537863526 bp
SRR27419280 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with cotyledon from China:Danzhou, GT-1, 47, C_2_3.R1 ILLUMINA 6831645586 bp
SRR27419281 RNA-Seq of Hevea brasiliensis: seedling emergence plant with cotyledon from China:Danzhou, GT-1, 69, D_2_2.R1 ILLUMINA 7423680648 bp
SRR27419282 RNA-Seq of Hevea brasiliensis: seedling emergence plant with endosperm from China:Danzhou, GT-1, 65, D_1_3.R1 ILLUMINA 8139077576 bp
SRR27419283 RNA-Seq of Hevea brasiliensis: seedling emergence plant with endosperm from China:Danzhou, GT-1, 63, D_1_2.R1 ILLUMINA 6351039162 bp
SRR27419284 RNA-Seq of Hevea brasiliensis: seedling emergence plant with endosperm from China:Danzhou, GT-1, 61, D_1_1.R1 ILLUMINA 7459192828 bp
SRR27419285 RNA-Seq of Hevea brasiliensis: seed imbibition plant with cotyledon from China:Danzhou, GT-1, 7, A_2_1.R1 ILLUMINA 6894110662 bp
SRR27419286 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with radicle from China:Danzhou, GT-1, 59, C_4_3.R1 ILLUMINA 8213334242 bp
SRR27419287 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with radicle from China:Danzhou, GT-1, 57, C_4_2.R1 ILLUMINA 8508625312 bp
SRR27419288 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with radicle from China:Danzhou, GT-1, 55, C_4_1.R1 ILLUMINA 7960330722 bp
SRR27419289 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with embryonic axis from China:Danzhou, GT-1, 53, C_3_3.R1 ILLUMINA 7104391148 bp
SRR27419290 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with embryonic axis from China:Danzhou, GT-1, 51, C_3_2.R1 ILLUMINA 7433044460 bp
SRR27419291 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with cotyledon from China:Danzhou, GT-1, 45, C_2_2.R1 ILLUMINA 6933968018 bp
SRR27419292 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with embryonic axis from China:Danzhou, GT-1, 49, C_3_1.R1 ILLUMINA 7899776702 bp
SRR27419293 RNA-Seq of Hevea brasiliensis: seed coat rupture plant with cotyledon from China:Danzhou, GT-1, 27, B_2_2.R1 ILLUMINA 7948648456 bp
SRR27419294 RNA-Seq of Hevea brasiliensis: seed coat rupture plant with cotyledon from China:Danzhou, GT-1, 29, B_2_3.R1 ILLUMINA 6468097986 bp
SRR27419295 RNA-Seq of Hevea brasiliensis: seed coat rupture plant with embryonic axis from China:Danzhou, GT-1, 31, B_3_1.R1 ILLUMINA 7150284276 bp
SRR27419296 RNA-Seq of Hevea brasiliensis: seed coat rupture plant with embryonic axis from China:Danzhou, GT-1, 33, B_3_2.R1 ILLUMINA 7050665348 bp
SRR27419297 RNA-Seq of Hevea brasiliensis: seed coat rupture plant with embryonic axis from China:Danzhou, GT-1, 35, B_3_3.R1 ILLUMINA 8288309366 bp
SRR27419298 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with endosperm from China:Danzhou, GT-1, 37, C_1_1.R1 ILLUMINA 6844670242 bp
SRR27419299 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with endosperm from China:Danzhou, GT-1, 39, C_1_2.R1 ILLUMINA 6832348038 bp
SRR27419300 RNA-Seq of Hevea brasiliensis: seed imbibition plant with endosperm from China:Danzhou, GT-1, 5, A_1_3.R1 ILLUMINA 7337482600 bp
SRR27419301 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with endosperm from China:Danzhou, GT-1, 41, C_1_3.R1 ILLUMINA 8773085806 bp
SRR27419302 RNA-Seq of Hevea brasiliensis: radicle protrusion plant with cotyledon from China:Danzhou, GT-1, 43, C_2_1.R1 ILLUMINA 6850601824 bp
SRR27419303 RNA-Seq of Hevea brasiliensis: seed coat rupture plant with cotyledon from China:Danzhou, GT-1, 25, B_2_1.R1 ILLUMINA 6699150032 bp
SRR27419304 RNA-Seq of Hevea brasiliensis: seed coat rupture plant with endosperm from China:Danzhou, GT-1, 23, B_1_3.R1 ILLUMINA 7221796366 bp
SRR27419305 RNA-Seq of Hevea brasiliensis: seed coat rupture plant with endosperm from China:Danzhou, GT-1, 21, B_1_2.R1 ILLUMINA 6448057266 bp
SRR27419306 RNA-Seq of Hevea brasiliensis: seed imbibition plant with endosperm from China:Danzhou, GT-1, 3, A_1_2.R1 ILLUMINA 7012883336 bp
SRR27419307 RNA-Seq of Hevea brasiliensis: seed coat rupture plant with endosperm from China:Danzhou, GT-1, 19, B_1_1.R1 ILLUMINA 6701880112 bp
SRR27419308 RNA-Seq of Hevea brasiliensis: seed imbibition plant with embryonic axis from China:Danzhou, GT-1, 17, A_3_3.R1 ILLUMINA 6385029866 bp
SRR27419309 RNA-Seq of Hevea brasiliensis: seed imbibition plant with embryonic axis from China:Danzhou, GT-1, 15, A_3_2.R1 ILLUMINA 6328151186 bp
SRR27419310 RNA-Seq of Hevea brasiliensis: seed imbibition plant with embryonic axis from China:Danzhou, GT-1, 13, A_3_1.R1 ILLUMINA 7507595274 bp
SRR27419311 RNA-Seq of Hevea brasiliensis: seed imbibition plant with cotyledon from China:Danzhou, GT-1, 11, A_2_3.R1 ILLUMINA 7035160366 bp
SRR27419312 RNA-Seq of Hevea brasiliensis: seed imbibition plant with endosperm from China:Danzhou, GT-1, 1, A_1_1.R1 ILLUMINA 7410021188 bp
PRJNA394848 RNAseq analysis of latex samples from healthy and Tapping Panel Dryness-affected trees. -
882
Library Title Platform Total Base VCF File
SRR5837291 RNA-Seq of Hevea brasiliensis: healthy wild type plant with latex, GSM2706159, PB217_T_D1_1_0_Healthy_1 ILLUMINA 4418276768 bp
SRR5837292 RNA-Seq of Hevea brasiliensis: healthy wild type plant with latex, GSM2706160, PB217_T_D1_1_0_Healthy_2 ILLUMINA 5199983471 bp
SRR5837293 RNA-Seq of Hevea brasiliensis: healthy wild type plant with latex, GSM2706161, PB217_T_D1_1_0_Healthy_3 ILLUMINA 6098457081 bp
PRJNA752925 Transcriptome sequencing of tapping panel dryness affected rubber trees Nie et al., 2023
883
Library Title Platform Total Base VCF File
SRR15372761 RNA-Seq of Hevea brasiliensis: TPD-affected rubber trees with partial latex flow less than 1/4 of the tapping panel from China:Hainan, RY 7-33-97, TPD_4-3 ILLUMINA 4732573250 bp
SRR15372762 RNA-Seq of Hevea brasiliensis: TPD-affected rubber trees with partial latex flow less than 1/4 of the tapping panel from China:Hainan, RY 7-33-97, TPD_4-2 ILLUMINA 4301081000 bp
SRR15372763 RNA-Seq of Hevea brasiliensis: TPD-affected rubber trees with partial latex flow less than 1/4 of the tapping panel from China:Hainan, RY 7-33-97, TPD_4-1 ILLUMINA 4992068000 bp
SRR15372764 RNA-Seq of Hevea brasiliensis: TPD-affected rubber trees with partial latex flow more than 3/4 of the tapping panel from China:Hainan, RY 7-33-97, TPD_2-3 ILLUMINA 4928404000 bp
SRR15372765 RNA-Seq of Hevea brasiliensis: TPD-affected rubber trees with partial latex flow more than 3/4 of the tapping panel from China:Hainan, RY 7-33-97, TPD_2-2 ILLUMINA 4403995750 bp
SRR15372766 RNA-Seq of Hevea brasiliensis: TPD-affected rubber trees with partial latex flow more than 3/4 of the tapping panel from China:Hainan, RY 7-33-97, TPD_2-1 ILLUMINA 4716361500 bp
SRR15372767 RNA-Seq of Hevea brasiliensis: normal latex from China:Hainan, RY 7-33-97, CK-3 ILLUMINA 5377599250 bp
SRR15372768 RNA-Seq of Hevea brasiliensis: normal latex from China:Hainan, RY 7-33-97, CK-2 ILLUMINA 5778086000 bp
SRR15372769 RNA-Seq of Hevea brasiliensis: normal latex from China:Hainan, RY 7-33-97, CK-1 ILLUMINA 6969839250 bp
PRJNA898098 Transcriptome profiling to comprehend genetic basis of disease resistance against Phytophthora meadii in rubber tree (Hevea brasiliensis) -
884
Library Title Platform Total Base VCF File
SRR22294932 RNA-Seq of Hevea brasiliensis: juvenile leaf from India, FX516 and RRIM 600, RRIM600_LIT ILLUMINA 11531750100 bp
SRR22294933 RNA-Seq of Hevea brasiliensis: juvenile leaf from India, FX516 and RRIM 600, RRIM600_MIT ILLUMINA 6663204900 bp
SRR22294934 RNA-Seq of Hevea brasiliensis: juvenile leaf from India, FX516 and RRIM 600, RRIM6OO_EIT ILLUMINA 10171645200 bp
SRR22294935 RNA-Seq of Hevea brasiliensis: juvenile leaf from India, FX516 and RRIM 600, RRIM600_C ILLUMINA 8648648400 bp
SRR22294936 RNA-Seq of Hevea brasiliensis: juvenile leaf from India, FX516 and RRIM 600, FX516_LIT ILLUMINA 10254097800 bp
SRR22294937 RNA-Seq of Hevea brasiliensis: juvenile leaf from India, FX516 and RRIM 600, FX516_MIT ILLUMINA 11424267000 bp
SRR22294938 RNA-Seq of Hevea brasiliensis: juvenile leaf from India, FX516 and RRIM 600, FX516_EIT ILLUMINA 6401273400 bp
SRR22294939 RNA-Seq of Hevea brasiliensis: juvenile leaf from India, FX516 and RRIM 600, FX516_C ILLUMINA 9494309400 bp

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