Omics-Seq

Project

Bioproject

Description

Publication

GVCF File

Library Num.

large-scale gene sequences of Hamamelis virginiana

Vong et al., 2019

Library	Title	Platform	Total Base	VCF File
ERR2040650	RNA-Seq of Ilex paraguariensis: leaves from , SXML	ILLUMINA	2111347770 bp

Ilex paraguariensis Transcriptome

Aguilera et al., 2023

Library	Title	Platform	Total Base	VCF File
SRR1411087	RNA-Seq of Ilex paraguariensis: leaves from , First IBS	ILLUMINA	7275170188 bp

De novo transcriptome assembly

Fay et al., 2018

Library	Title	Platform	Total Base	VCF File
SRR3584943	RNA-Seq of Ilex paraguariensis: adult plant with root from Argentina: Misiones, R_LM	ILLUMINA	3629785066 bp
SRR3584945	RNA-Seq of Ilex paraguariensis: adult plant with disease with leaves from Argentina: Misiones, LD_SDP_1	ILLUMINA	3069408382 bp
SRR3584947	RNA-Seq of Ilex paraguariensis: adult plant with disease with leaves from Argentina: Misiones, LD_SDP_1	ILLUMINA	3012889388 bp
SRR3584951	RNA-Seq of Ilex paraguariensis: adult plant with leaves from Argentina: Misiones, LN_SP	ILLUMINA	3207548708 bp
SRR3584954	RNA-Seq of Ilex paraguariensis: adult plant with disease with laves from Argentina: Misiones, LD_SP_1	ILLUMINA	5146408136 bp
SRR3584955	RNA-Seq of Ilex paraguariensis: adult plant with disease with laves from Argentina: Misiones, LD_SP_1	ILLUMINA	4415953108 bp
SRR3584956	RNA-Seq of Ilex paraguariensis: adult plant with disease with leaves from Argentina: Misiones, LD_SP_2	ILLUMINA	4553900928 bp
SRR3584957	RNA-Seq of Ilex paraguariensis: adult plant with disease with leaves from Argentina: Misiones, LD_SP_2	ILLUMINA	5322005120 bp
SRR3584944	RNA-Seq of Ilex paraguariensis: adult plant with root from Argentina: Misiones, R_LM	ILLUMINA	3132756794 bp
SRR3584946	RNA-Seq of Ilex paraguariensis: adult plant with disease with leaves from Argentina: Misiones, LD_SDP_1	ILLUMINA	3215854342 bp
SRR3584948	RNA-Seq of Ilex paraguariensis: adult plant with whole plant from Argentina: Misiones, WP_LM	ILLUMINA	2380129236 bp
SRR3584950	RNA-Seq of Ilex paraguariensis: adult plant with root from Argentina: Misiones, R_LM	ILLUMINA	4621567898 bp
SRR3584952	RNA-Seq of Ilex paraguariensis: adult plant with leaves from Argentina: Misiones, LN_SP	ILLUMINA	3321881314 bp

Gene expression changes of Ilex paraguariensis triggered by drought stress

Avico et al., 2023

Library	Title	Platform	Total Base	VCF File
SRR24273717	RNA-Seq of Ilex paraguariensis: roots under drought treatment from Argentina: Corrientes, Roots_SI-49_Drought_3	ILLUMINA	5715413400 bp
SRR24273718	RNA-Seq of Ilex paraguariensis: roots under drought treatment from Argentina: Corrientes, Roots_SI-49_Drought_2	ILLUMINA	5053261200 bp
SRR24273719	RNA-Seq of Ilex paraguariensis: roots under drought treatment from Argentina: Corrientes, Roots_SI-49_Drought_1	ILLUMINA	5475682400 bp
SRR24273720	RNA-Seq of Ilex paraguariensis: roots from Argentina: Corrientes, Roots_SI-49_Control_3	ILLUMINA	4893349000 bp
SRR24273721	RNA-Seq of Ilex paraguariensis: roots from Argentina: Corrientes, Roots_SI-49_Control_2	ILLUMINA	5077725400 bp
SRR24273722	RNA-Seq of Ilex paraguariensis: roots from Argentina: Corrientes, Roots_SI-49_Control_1	ILLUMINA	5011147800 bp
SRR5740154	RNA-Seq of Ilex paraguariensis: leaf under drought treatment from Argentina: Corrientes, SI-49_2_leaf_Drought	ILLUMINA	6747208040 bp
SRR5740155	RNA-Seq of Ilex paraguariensis: leaf under drought treatment from Argentina: Corrientes, SI-49_3_leaf_Drought	ILLUMINA	7109752590 bp
SRR5740156	RNA-Seq of Ilex paraguariensis: leaf from Argentina: Corrientes, SI-49_1_leaf_Control	ILLUMINA	7702850244 bp
SRR5740157	RNA-Seq of Ilex paraguariensis: leaf from Argentina: Corrientes, SI-49_2_leaf_Control	ILLUMINA	5564070810 bp
SRR5740158	RNA-Seq of Ilex paraguariensis: leaf from Argentina: Corrientes, SI-49_3_leaf_Control	ILLUMINA	6204056704 bp
SRR5740159	RNA-Seq of Ilex paraguariensis: leaf under drought treatment from Argentina: Corrientes, SI-49_1_leaf_Drought	ILLUMINA	6153951210 bp