Omics-Seq

Project

Bioproject

Description

Publication

GVCF File

Library Num.

PRJNA1051648

Transcriptome sequencing in salt response of Kandelia obovata

Liu et al., 2024

Library	Title	Platform	Total Base
SRR27189923	RNA-Seq of Kandelia obovata: 6 months plants under waterlogging stress (9h) with root from China: Wenzhou, WL_9h_3	ILLUMINA	6938987258 bp
SRR27189924	RNA-Seq of Kandelia obovata: 6 months plants under waterlogging stress (9h) with root from China: Wenzhou, WL_9h_2	ILLUMINA	6778920312 bp
SRR27189925	RNA-Seq of Kandelia obovata: 6 months plants under waterlogging stress (9h) with root from China: Wenzhou, WL_9h_1	ILLUMINA	6761143384 bp
SRR27189926	RNA-Seq of Kandelia obovata: 6 months plants under waterlogging stress (6h) with root from China: Wenzhou, WL_6h_3	ILLUMINA	6458041688 bp
SRR27189927	RNA-Seq of Kandelia obovata: 6 months plants under waterlogging stress (6h) with root from China: Wenzhou, WL_6h_2	ILLUMINA	7685713968 bp
SRR27189928	RNA-Seq of Kandelia obovata: 6 months plants under waterlogging stress (6h) with root from China: Wenzhou, WL_6h_1	ILLUMINA	6872480516 bp
SRR27189929	RNA-Seq of Kandelia obovata: 6 months plants under waterlogging stress (3h) with root from China: Wenzhou, WL_3h_3	ILLUMINA	6513581300 bp
SRR27189930	RNA-Seq of Kandelia obovata: 6 months plants under waterlogging stress (3h) with root from China: Wenzhou, WL_3h_2	ILLUMINA	7759536056 bp
SRR27189931	RNA-Seq of Kandelia obovata: 6 months plants under waterlogging stress (3h) with root from China: Wenzhou, WL_3h_1	ILLUMINA	7002586646 bp

PRJNA1051781

Transcriptome sequencing in waterlogging response of Kandelia obovata

Liu et al., 2024

Library	Title	Platform	Total Base
SRR27194180	RNA-Seq of Kandelia obovata: 6 months plants under salt stress (30‰) with root from China: Wenzhou, NaCl_30_1	ILLUMINA	6460697476 bp
SRR27194181	RNA-Seq of Kandelia obovata: 6 months plants under salt stress (20‰) with root from China: Wenzhou, NaCl_20_3	ILLUMINA	6710570766 bp
SRR27194182	RNA-Seq of Kandelia obovata: 6 months plants under salt stress (20‰) with root from China: Wenzhou, NaCl_20_2	ILLUMINA	6658729748 bp
SRR27194183	RNA-Seq of Kandelia obovata: 6 months plants under salt stress (20‰) with root from China: Wenzhou, NaCl_20_1	ILLUMINA	6639055656 bp
SRR27194184	RNA-Seq of Kandelia obovata: 6 months plants under salt stress (10‰) with root from China: Wenzhou, NaCl_10_3	ILLUMINA	7411870032 bp
SRR27194185	RNA-Seq of Kandelia obovata: 6 months plants under salt stress (10‰) with root from China: Wenzhou, NaCl_10_2	ILLUMINA	6415827826 bp
SRR27194186	RNA-Seq of Kandelia obovata: 6 months plants under salt stress (10‰) with root from China: Wenzhou, NaCl_10_1	ILLUMINA	6963127628 bp
SRR27194187	RNA-Seq of Kandelia obovata: 6 months plants under no stress (control) with root from China: Wenzhou, Control_3	ILLUMINA	6410804056 bp
SRR27194188	RNA-Seq of Kandelia obovata: 6 months plants under salt stress (30‰) with root from China: Wenzhou, NaCl_30_3	ILLUMINA	6705450054 bp
SRR27194189	RNA-Seq of Kandelia obovata: 6 months plants under salt stress (30‰) with root from China: Wenzhou, NaCl_30_2	ILLUMINA	6780488296 bp
SRR27194190	RNA-Seq of Kandelia obovata: 6 months plants under no stress (control) with root from China: Wenzhou, Control_2	ILLUMINA	6994829172 bp
SRR27194191	RNA-Seq of Kandelia obovata: 6 months plants under no stress (control) with root from China: Wenzhou, Control_1	ILLUMINA	6710033508 bp

PRJNA353062

The transcriptomes of several mangrove and terrestrial plants in Rhizophoraceae were de novo assembled and compared, to provide insights on adaptation to the extreme intertidal environments.

Guo et al., 2017

Library	Title	Platform	Total Base	VCF File
SRR5019675	RNA-Seq of Kandelia obovata: young seedlingplant with leaves and roots from China: Hainan, Kob_leaf_root	ILLUMINA	2330839620 bp

PRJNA386602

Raw sequence reads of Kandelia obovata under ABA treatment

Library	Title	Platform	Total Base
SRR5601305	RNA-Seq of Kandelia obovata: embryo from China:Xiamen, ABA1	ILLUMINA	3732250536 bp
SRR5601306	RNA-Seq of Kandelia obovata: embryo from China:Xiamen, ABA2	ILLUMINA	4797495360 bp
SRR5601307	RNA-Seq of Kandelia obovata: embryo from China:Xiamen, ABA3	ILLUMINA	4390978788 bp
SRR5601308	RNA-Seq of Kandelia obovata: embryo from China:Xiamen, CK1	ILLUMINA	4945709664 bp
SRR5601309	RNA-Seq of Kandelia obovata: embryo from China:Xiamen, CK2	ILLUMINA	3612309372 bp
SRR5601310	RNA-Seq of Kandelia obovata: embryo from China:Xiamen, CK3	ILLUMINA	3202398360 bp

PRJNA416402

Raw sequence reads in winter cold extremes response of Kandelia obovata

Sun et al., 2022

Library	Title	Platform	Total Base
SRR6251193	RNA-Seq of Kandelia obovata: leaf from China: Yunxiao\, Fujian Province, leaf1	ILLUMINA	2229957992 bp
SRR6251400	RNA-Seq of Kandelia obovata: stem from China: Yunxiao\, Fujian Province, stem1	ILLUMINA	5696765088 bp
SRR6251245	RNA-Seq of Kandelia obovata: leaf from China: Yunxiao\, Fujian Province, leaf2	ILLUMINA	1470731902 bp
SRR6251267	RNA-Seq of Kandelia obovata: leaf from China: Yunxiao\, Fujian Province, leaf3	ILLUMINA	2617714970 bp
SRR6255795	RNA-Seq of Kandelia obovata: stem from China: Yunxiao\, Fujian Province, stem2	ILLUMINA	2843366454 bp
SRR6255802	RNA-Seq of Kandelia obovata: stem from China: Yunxiao\, Fujian Province, stem3	ILLUMINA	2788818834 bp
SRR6255803	RNA-Seq of Kandelia obovata: flower from China: Yunxiao\, Fujian Province, flower1	ILLUMINA	1909442976 bp
SRR6255804	RNA-Seq of Kandelia obovata: flower from China: Yunxiao\, Fujian Province, flower2	ILLUMINA	4247926478 bp
SRR6255805	RNA-Seq of Kandelia obovata: flower from China: Yunxiao\, Fujian Province, flower3	ILLUMINA	1608966562 bp
SRR6255812	RNA-Seq of Kandelia obovata: pistil from China: Yunxiao\, Fujian Province, pistil1	ILLUMINA	3118982900 bp
SRR6255813	RNA-Seq of Kandelia obovata: pistil from China: Yunxiao\, Fujian Province, pistil2	ILLUMINA	5154368120 bp
SRR6255814	RNA-Seq of Kandelia obovata: pistil from China: Yunxiao\, Fujian Province, pistil3	ILLUMINA	6803675560 bp
SRR6255815	RNA-Seq of Kandelia obovata: stamen from China: Yunxiao\, Fujian Province, stamen1	ILLUMINA	2119546635 bp
SRR6255818	RNA-Seq of Kandelia obovata: stamen from China: Yunxiao\, Fujian Province, stamen2	ILLUMINA	2389724845 bp
SRR6255819	RNA-Seq of Kandelia obovata: stamen from China: Yunxiao\, Fujian Province, stamen3	ILLUMINA	1978258780 bp
SRR6255821	RNA-Seq of Kandelia obovata: sepal from China: Yunxiao\, Fujian Province, sepal1	ILLUMINA	1434978844 bp
SRR6255823	RNA-Seq of Kandelia obovata: sepal from China: Yunxiao\, Fujian Province, sepal2	ILLUMINA	1481222480 bp
SRR6255824	RNA-Seq of Kandelia obovata: sepal from China: Yunxiao\, Fujian Province, sepal3	ILLUMINA	1488279712 bp
SRR6255826	RNA-Seq of Kandelia obovata: fruit from China: Yunxiao\, Fujian Province, fruit1	ILLUMINA	2772561095 bp
SRR6255827	RNA-Seq of Kandelia obovata: fruit from China: Yunxiao\, Fujian Province, fruit2	ILLUMINA	2436844480 bp
SRR6255828	RNA-Seq of Kandelia obovata: fruit from China: Yunxiao\, Fujian Province, fruit3	ILLUMINA	1415353990 bp
SRR6255829	RNA-Seq of Kandelia obovata: root from China: Yunxiao\, Fujian Province, root1	ILLUMINA	1586811822 bp
SRR6255830	RNA-Seq of Kandelia obovata: root from China: Yunxiao\, Fujian Province, root2	ILLUMINA	2130349962 bp
SRR6255831	RNA-Seq of Kandelia obovata: root from China: Yunxiao\, Fujian Province, root3	ILLUMINA	1499070984 bp
SRR6255843	RNA-Seq of Kandelia obovata: leaf from China: Yueqing\, Zhejiang Province, CT1	ILLUMINA	7351045884 bp
SRR6255845	RNA-Seq of Kandelia obovata: leaf from China: Yueqing\, Zhejiang Province, CT2	ILLUMINA	6485404968 bp
SRR6255846	RNA-Seq of Kandelia obovata: leaf from China: Yueqing\, Zhejiang Province, CT3	ILLUMINA	5677075656 bp
SRR6255847	RNA-Seq of Kandelia obovata: leaf from China: Yueqing\, Zhejiang Province, NCT1	ILLUMINA	6660451224 bp
SRR6255848	RNA-Seq of Kandelia obovata: leaf from China: Yueqing\, Zhejiang Province, NCT2	ILLUMINA	6716367756 bp
SRR6255849	RNA-Seq of Kandelia obovata: leaf from China: Yueqing\, Zhejiang Province, NCT3	ILLUMINA	7517267604 bp

PRJNA630823

Transcriptome analysis of vivipary germination in Kandelia obovata

Library	Title	Platform	Total Base
SRR11788329	RNA-Seq of Kandelia obovata: seeds fertilized for 2 weeks or so with stage2 embryo from China: Fujian, S2embryo-1	ILLUMINA	4546816596 bp
SRR11788330	RNA-Seq of Kandelia obovata: seeds fertilized for 2 weeks or so with stage2 seed coat from China: Fujian, S2seed coat-3	ILLUMINA	5423792976 bp
SRR11788331	RNA-Seq of Kandelia obovata: seeds fertilized for 2 weeks or so with stage2 seed coat from China: Fujian, S2seed coat-2	ILLUMINA	5545577016 bp
SRR11788332	RNA-Seq of Kandelia obovata: seeds fertilized for 2 weeks or so with stage2 seed coat from China: Fujian, S2seed coat-1	ILLUMINA	4544721468 bp
SRR11788333	RNA-Seq of Kandelia obovata: seeds fertilized for 2 weeks or so with seed from China: Fujian, S2seed-3	ILLUMINA	3077359740 bp
SRR11788334	RNA-Seq of Kandelia obovata: seeds fertilized for 2 weeks or so with seed from China: Fujian, S2seed-2	ILLUMINA	3520658484 bp
SRR11788335	RNA-Seq of Kandelia obovata: seeds fertilized for 2 weeks or so with seed from China: Fujian, S2seed-1	ILLUMINA	2570189580 bp
SRR11788336	RNA-Seq of Kandelia obovata: embryo germinate out of seed coat with stage4 axis from China: Fujian, S4axis-3	ILLUMINA	4722063192 bp
SRR11788337	RNA-Seq of Kandelia obovata: embryo germinate out of seed coat with stage4 axis from China: Fujian, S4axis-2	ILLUMINA	5428560564 bp
SRR11788338	RNA-Seq of Kandelia obovata: embryo germinate out of seed coat with stage4 axis from China: Fujian, S4axis-1	ILLUMINA	6800645880 bp
SRR11788339	RNA-Seq of Kandelia obovata: embryo germinate out of seed coat with stage4 cotyledon from China: Fujian, S4cotyledon-3	ILLUMINA	5328601740 bp
SRR11788340	RNA-Seq of Kandelia obovata: embryo germinate out of seed coat with stage4 cotyledon from China: Fujian, S4cotyledon-2	ILLUMINA	5648864760 bp
SRR11788341	RNA-Seq of Kandelia obovata: embryo germinate out of seed coat with stage4 cotyledon from China: Fujian, S4cotyledon-1	ILLUMINA	5159940156 bp
SRR11788342	RNA-Seq of Kandelia obovata: embryo germinate out of seed coat with stage4 seed coat from China: Fujian, S4seed coat-3	ILLUMINA	4760259084 bp
SRR11788343	RNA-Seq of Kandelia obovata: embryo germinate out of seed coat with stage4 seed coat from China: Fujian, S4seed coat-2	ILLUMINA	4663861524 bp
SRR11788344	RNA-Seq of Kandelia obovata: embryo germinate out of seed coat with stage4 seed coat from China: Fujian, S4seed coat-1	ILLUMINA	5287563540 bp
SRR11788345	RNA-Seq of Kandelia obovata: embryo enclosed in seed coat with stage3 axis from China: Fujian, S3axis-3	ILLUMINA	7097468364 bp
SRR11788346	RNA-Seq of Kandelia obovata: unfertilized stage flowering plant with ovule from China: Fujian, S1ovule-3	ILLUMINA	2999833704 bp
SRR11788347	RNA-Seq of Kandelia obovata: embryo enclosed in seed coat with stage3 axis from China: Fujian, S3axis-2	ILLUMINA	8073001188 bp
SRR11788348	RNA-Seq of Kandelia obovata: embryo enclosed in seed coat with stage3 axis from China: Fujian, S3axis-1	ILLUMINA	5925239208 bp
SRR11788349	RNA-Seq of Kandelia obovata: embryo enclosed in seed coat with stage3 cotyledon from China: Fujian, S3cotyledon-3	ILLUMINA	5552772624 bp
SRR11788350	RNA-Seq of Kandelia obovata: embryo enclosed in seed coat with stage3 cotyledon from China: Fujian, S3cotyledon-2	ILLUMINA	6505949016 bp
SRR11788351	RNA-Seq of Kandelia obovata: embryo enclosed in seed coat with stage3 cotyledon from China: Fujian, S3cotyledon-1	ILLUMINA	6532792560 bp
SRR11788352	RNA-Seq of Kandelia obovata: embryo enclosed in seed coat with stage3 seed coat from China: Fujian, S3seed coat-3	ILLUMINA	6305236080 bp
SRR11788353	RNA-Seq of Kandelia obovata: embryo enclosed in seed coat with stage3 seed coat from China: Fujian, S3seed coat-2	ILLUMINA	6016513140 bp
SRR11788354	RNA-Seq of Kandelia obovata: embryo enclosed in seed coat with stage3 seed coat from China: Fujian, S3seed coat-1	ILLUMINA	6210574920 bp
SRR11788355	RNA-Seq of Kandelia obovata: seeds fertilized for 2 weeks or so with stage2 embryo from China: Fujian, S2embryo-3	ILLUMINA	4409594028 bp
SRR11788356	RNA-Seq of Kandelia obovata: seeds fertilized for 2 weeks or so with stage2 embryo from China: Fujian, S2embryo-2	ILLUMINA	7415128728 bp
SRR11788357	RNA-Seq of Kandelia obovata: unfertilized stage flowering plant with ovule from China: Fujian, S1ovule-2	ILLUMINA	5251969044 bp
SRR11788358	RNA-Seq of Kandelia obovata: unfertilized stage flowering plant with ovule from China: Fujian, S1ovule-1	ILLUMINA	4878192564 bp

PRJNA631086

Kandelia obovata Genome sequencing and assembly

Qiao et al., 2020

Library	Title	Platform	Total Base
SRR12158670	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	11830224226 bp
SRR12158671	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	12225341833 bp
SRR12158672	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	4340766065 bp
SRR12158673	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	4156282216 bp
SRR12158674	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	4213244136 bp
SRR12158675	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	6313066800 bp
SRR12158676	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	7740516600 bp
SRR12158677	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	5710415351 bp
SRR12158678	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	7659638700 bp
SRR12158679	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	8121541800 bp
SRR12158680	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	2072476338 bp
SRR12158681	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	7884745500 bp
SRR12158682	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	8391215400 bp
SRR12158683	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	7279845300 bp
SRR12158684	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	1444852152 bp
SRR12158685	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	2786342582 bp
SRR12158686	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	3044754372 bp
SRR12158687	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	3442339954 bp
SRR12158688	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	7419532500 bp
SRR12158689	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	8298859612 bp
SRR12158690	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	7936632193 bp
SRR12158691	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	8510061693 bp
SRR12158692	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	12109364873 bp
SRR12158693	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	1439893248 bp
SRR12158694	RNA-Seq of Kandelia obovata: 3 years old plant with root from China:Fujian, Kandelia obovata, RNA	ILLUMINA	8522912400 bp

PRJNA678025

Cold acclimation in Kandelia obovata seedlings

Du et al., 2022

Library	Title	Platform	Total Base
SRR13052572	RNA-Seq of Kandelia obovata: 1 year old seedling under second time cold treatment with leave from China: Fujian, COLD-2_1	ILLUMINA	7765499100 bp
SRR13052573	RNA-Seq of Kandelia obovata: 1 year old seedling under recovery treatment after first time cold treatment with leave from China: Fujian, REC-1_3	ILLUMINA	9733766400 bp
SRR13052574	RNA-Seq of Kandelia obovata: 1 year old seedling under recovery treatment after first time cold treatment with leave from China: Fujian, REC-1_2	ILLUMINA	9179280600 bp
SRR13052575	RNA-Seq of Kandelia obovata: 1 year old seedling under recovery treatment after first time cold treatment with leave from China: Fujian, REC-1_1	ILLUMINA	8071912800 bp
SRR13052576	RNA-Seq of Kandelia obovata: 1 year old seedling under first time cold treatment with leave from China: Fujian, COLD-1_3	ILLUMINA	7685729100 bp
SRR13052577	RNA-Seq of Kandelia obovata: 1 year old seedling under first time cold treatment with leave from China: Fujian, COLD-1_2	ILLUMINA	6611901600 bp
SRR13052578	RNA-Seq of Kandelia obovata: 1 year old seedling under first time cold treatment with leave from China: Fujian, COLD-1_1	ILLUMINA	8653866000 bp
SRR13052579	RNA-Seq of Kandelia obovata: 1 year old seedling under untreated with leave from China: Fujian, CTR_3	ILLUMINA	8497143300 bp
SRR13052580	RNA-Seq of Kandelia obovata: 1 year old seedling under fourth time cold treatmnt with leave from China: Fujian, COLD-4_3	ILLUMINA	7857737100 bp
SRR13052581	RNA-Seq of Kandelia obovata: 1 year old seedling under fourth time cold treatmnt with leave from China: Fujian, COLD-4_2	ILLUMINA	8051789700 bp
SRR13052582	RNA-Seq of Kandelia obovata: 1 year old seedling under fourth time cold treatmnt with leave from China: Fujian, COLD-4_1	ILLUMINA	10219815600 bp
SRR13052583	RNA-Seq of Kandelia obovata: 1 year old seedling under recovery treatment after second time cold treatment with leave from China: Fujian, REC-2_3	ILLUMINA	6852846600 bp
SRR13052584	RNA-Seq of Kandelia obovata: 1 year old seedling under recovery treatment after second time cold treatment with leave from China: Fujian, REC-2_2	ILLUMINA	8398409700 bp
SRR13052585	RNA-Seq of Kandelia obovata: 1 year old seedling under recovery treatment after second time cold treatment with leave from China: Fujian, REC-2_1	ILLUMINA	7078209300 bp
SRR13052586	RNA-Seq of Kandelia obovata: 1 year old seedling under second time cold treatment with leave from China: Fujian, COLD-2_3	ILLUMINA	8415195900 bp
SRR13052587	RNA-Seq of Kandelia obovata: 1 year old seedling under second time cold treatment with leave from China: Fujian, COLD-2_2	ILLUMINA	8601729000 bp
SRR13052588	RNA-Seq of Kandelia obovata: 1 year old seedling under untreated with leave from China: Fujian, CTR_2	ILLUMINA	9049449600 bp
SRR13052589	RNA-Seq of Kandelia obovata: 1 year old seedling under untreated with leave from China: Fujian, CTR_1	ILLUMINA	8360204700 bp

PRJNA766543

Genome-wide association study and transcriptome analysis of Kandelia obovata

Library	Title	Platform	Total Base
SRR16378849	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Brown_L 1	ILLUMINA	7642443900 bp
SRR16378850	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Green_L 3	ILLUMINA	7002786900 bp
SRR16378851	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Green_L 2	ILLUMINA	7332682500 bp
SRR16378852	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Green_L 1	ILLUMINA	7039235100 bp
SRR16378853	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Chimeric_L 3	ILLUMINA	5930209500 bp
SRR16378859	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Chimeric_L 2	ILLUMINA	5730407700 bp
SRR16378870	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Chimeric_L 1	ILLUMINA	6126731700 bp
SRR16378881	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Albino_L 3	ILLUMINA	6078828600 bp
SRR16378887	RNA-Seq of Kandelia obovata: plant grown under dark with leaf from China, Kandelia obovata, Green_D 3	ILLUMINA	6168704700 bp
SRR16378888	RNA-Seq of Kandelia obovata: plant grown under dark with leaf from China, Kandelia obovata, Green_D 2	ILLUMINA	6445874400 bp
SRR16378889	RNA-Seq of Kandelia obovata: plant grown under dark with leaf from China, Kandelia obovata, Green_D 1	ILLUMINA	6580177200 bp
SRR16378890	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Brown_L 3	ILLUMINA	5885181300 bp
SRR16378891	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Brown_L 2	ILLUMINA	6668178000 bp
SRR16378892	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Albino_L 2	ILLUMINA	6576676200 bp
SRR16378893	RNA-Seq of Kandelia obovata: plant grown under light with leaf from China, Kandelia obovata, Albino_L 1	ILLUMINA	6743142300 bp

PRJNA907372

Genome-wide analysis in freezing tolerance of Kandelia obovata

Liu et al., 2022

Library	Title	Platform	Total Base
SRR22489048	RNA-Seq of Kandelia obovata: plant under ABA\, 9.7% treatment with leaf, GSM6775380	ILLUMINA	7348197258 bp
SRR22489049	RNA-Seq of Kandelia obovata: plant under ABA\, 9.7% treatment with leaf, GSM6775379	ILLUMINA	7481253324 bp
SRR22489050	RNA-Seq of Kandelia obovata: plant under ABA\, 9.7% treatment with leaf, GSM6775378	ILLUMINA	8119091216 bp
SRR22489051	RNA-Seq of Kandelia obovata: plant under ABA\, -5.3% treatment with leaf, GSM6775377	ILLUMINA	7795674584 bp
SRR22489052	RNA-Seq of Kandelia obovata: plant under ABA\, -5.3% treatment with leaf, GSM6775376	ILLUMINA	6931523932 bp
SRR22489053	RNA-Seq of Kandelia obovata: plant under ABA\, -5.3% treatment with leaf, GSM6775375	ILLUMINA	6960891922 bp
SRR22489054	RNA-Seq of Kandelia obovata: plant under ABA\, -4.1% treatment with leaf, GSM6775374	ILLUMINA	7916428076 bp
SRR22489055	RNA-Seq of Kandelia obovata: plant under ABA\, -4.1% treatment with leaf, GSM6775373	ILLUMINA	7980522442 bp
SRR22489056	RNA-Seq of Kandelia obovata: plant under ABA\, -4.1% treatment with leaf, GSM6775372	ILLUMINA	7207973524 bp
SRR22489057	RNA-Seq of Kandelia obovata: plant under ABA\,10.2% treatment with leaf, GSM6775371	ILLUMINA	8131372348 bp
SRR22489058	RNA-Seq of Kandelia obovata: plant under ABA\,10.2% treatment with leaf, GSM6775370	ILLUMINA	7301182502 bp
SRR22489059	RNA-Seq of Kandelia obovata: plant under ABA\,10.2% treatment with leaf, GSM6775369	ILLUMINA	7298283302 bp
SRR22489060	RNA-Seq of Kandelia obovata: plant under 0.097 treatment with leaf, GSM6775368	ILLUMINA	8488347824 bp
SRR22489061	RNA-Seq of Kandelia obovata: plant under 0.097 treatment with leaf, GSM6775367	ILLUMINA	8074534136 bp
SRR22489062	RNA-Seq of Kandelia obovata: plant under 0.097 treatment with leaf, GSM6775366	ILLUMINA	7330745282 bp
SRR22489063	RNA-Seq of Kandelia obovata: plant under -0.053 treatment with leaf, GSM6775365	ILLUMINA	7358871448 bp
SRR22489064	RNA-Seq of Kandelia obovata: plant under -0.053 treatment with leaf, GSM6775364	ILLUMINA	7714566444 bp
SRR22489065	RNA-Seq of Kandelia obovata: plant under -0.053 treatment with leaf, GSM6775363	ILLUMINA	8009326598 bp
SRR22489066	RNA-Seq of Kandelia obovata: plant under -0.041 treatment with leaf, GSM6775362	ILLUMINA	7631032942 bp
SRR22489067	RNA-Seq of Kandelia obovata: plant under -0.041 treatment with leaf, GSM6775361	ILLUMINA	7698875430 bp
SRR22489068	RNA-Seq of Kandelia obovata: plant under -0.041 treatment with leaf, GSM6775360	ILLUMINA	6971121568 bp
SRR22489069	RNA-Seq of Kandelia obovata: plant under 0.102 treatment with leaf, GSM6775359	ILLUMINA	7391223802 bp
SRR22489070	RNA-Seq of Kandelia obovata: plant under 0.102 treatment with leaf, GSM6775358	ILLUMINA	6841452130 bp
SRR22489071	RNA-Seq of Kandelia obovata: plant under 0.102 treatment with leaf, GSM6775357	ILLUMINA	7525574542 bp

PRJNA927281

normal RNA-seq of Kandelia obovata

Kuo et al., 2023

Library	Title	Platform	Total Base
SRR23237668	RNA-Seq of Kandelia obovata: seedling with root from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., R-18-1	ILLUMINA	6688890666 bp
SRR23237670	RNA-Seq of Kandelia obovata: seedling with root from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., R-1-2	ILLUMINA	7381315854 bp
SRR23237673	RNA-Seq of Kandelia obovata: seedling with leaf from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., L-18-2	ILLUMINA	6304459710 bp
SRR23237676	RNA-Seq of Kandelia obovata: seedling with stem from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., S-18-3	ILLUMINA	7569236680 bp
SRR23237679	RNA-Seq of Kandelia obovata: seedling with stem from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., S-1-3	ILLUMINA	6458989638 bp
SRR23237683	RNA-Seq of Kandelia obovata: seedling with root from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., R-18-2	ILLUMINA	5950653772 bp
SRR23237684	RNA-Seq of Kandelia obovata: seedling with leaf from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., L-1-2	ILLUMINA	6163687540 bp
SRR23237685	RNA-Seq of Kandelia obovata: seedling with leaf from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., L-1-1	ILLUMINA	5793191698 bp
SRR23237669	RNA-Seq of Kandelia obovata: seedling with root from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., R-1-3	ILLUMINA	6582513718 bp
SRR23237671	RNA-Seq of Kandelia obovata: seedling with root from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., R-1-1	ILLUMINA	6732827236 bp
SRR23237672	RNA-Seq of Kandelia obovata: seedling with leaf from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., L-18-3	ILLUMINA	6978343290 bp
SRR23237674	RNA-Seq of Kandelia obovata: seedling with leaf from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., L-18-1	ILLUMINA	6435690856 bp
SRR23237675	RNA-Seq of Kandelia obovata: seedling with leaf from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., L-1-3	ILLUMINA	5814221512 bp
SRR23237677	RNA-Seq of Kandelia obovata: seedling with stem from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., S-18-2	ILLUMINA	6190199082 bp
SRR23237678	RNA-Seq of Kandelia obovata: seedling with stem from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., S-18-1	ILLUMINA	6957880242 bp
SRR23237680	RNA-Seq of Kandelia obovata: seedling with stem from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., S-1-2	ILLUMINA	5931146460 bp
SRR23237681	RNA-Seq of Kandelia obovata: seedling with stem from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., S-1-1	ILLUMINA	6614658340 bp
SRR23237682	RNA-Seq of Kandelia obovata: seedling with root from China: zhejiang\,zhoushan, Seeds from Guangxi Province are planted in Zhoushan City., R-18-3	ILLUMINA	6825544416 bp

Species Info.

Omics Data

Omics Analysis

Seq. Analysis

Omics Analysis

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Project