Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA1045227 Transcriptome profiling of litchi 'Feizixiao' leaves in response to low temperature Zhang et al., 2017
5
Library Title Platform Total Base VCF File
SRR26949150 RNA-Seq of Litchi chinensis: two years old plants after 3 weeks low temperature treatment with leaves from China:Guangzhou, Feizixiao, LT_3W ILLUMINA 2625726200 bp
SRR26949151 RNA-Seq of Litchi chinensis: two years old plants after 3 weeks control treatment with leaves from China:Guangzhou, Feizixiao, NT_3W ILLUMINA 1979837400 bp
SRR26949152 RNA-Seq of Litchi chinensis: two years old plants after 2 weeks low temperature treatment with leaves from China:Guangzhou, Feizixiao, LT_2W ILLUMINA 1862520600 bp
SRR26949153 RNA-Seq of Litchi chinensis: two years old plants after 2 weeks control treatment with leaves from China:Guangzhou, Feizixiao, NT_2W ILLUMINA 2220949200 bp
SRR26949154 RNA-Seq of Litchi chinensis: two years old plants after 0 week low temperature treatment with leaves from China:Guangzhou, Feizixiao, sample_0W ILLUMINA 1971441600 bp
PRJNA1045234 Transcriptomic Analysis Reveals a Regulatory Network of Oxidative Stress-Induced Flowering Signals Produced in Litchi Leaves Lu et al., 2020
16
Library Title Platform Total Base VCF File
SRR26949298 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 3d\, sprayed with 60 µM MV\, replicate 2 with leaves from China:Guangzhou, Nuomici, MM3D-2 ILLUMINA 1710182100 bp
SRR26949299 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 3d\, sprayed with 60 µM MV\, replicate 1 with leaves from China:Guangzhou, Nuomici, MM3D-1 ILLUMINA 1213550700 bp
SRR26949300 RNA-Seq of Litchi chinensis: 5 years old air laying potted water treatment plant were rewarmed for 15 d\, replicate 2 with leaves from China:Guangzhou, Nuomici, M78D-2 ILLUMINA 1405964400 bp
SRR26949301 RNA-Seq of Litchi chinensis: 5 years old air laying potted water treatment plant were rewarmed for 15 d\, replicate 1 with leaves from China:Guangzhou, Nuomici, M78D-1 ILLUMINA 1266243000 bp
SRR26949302 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 63d\, sprayed with water\, replicate 2 with leaves from China:Guangzhou, Nuomici, M63D-2 ILLUMINA 1478617200 bp
SRR26949303 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 63d\, sprayed with water\, replicate 1 with leaves from China:Guangzhou, Nuomici, M63D-1 ILLUMINA 1652098200 bp
SRR26949304 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 33d\, sprayed with water\, replicate 2 with leaves from China:Guangzhou, Nuomici, M33D-2 ILLUMINA 1068165600 bp
SRR26949305 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 33d\, sprayed with water\, replicate 1 with leaves from China:Guangzhou, Nuomici, M33D-1 ILLUMINA 1189844400 bp
SRR26949306 RNA-Seq of Litchi chinensis: 5 years old air laying potted MV treatment plant were rewarmed for 15 d\, replicate 2 with leaves from China:Guangzhou, Nuomici, MM78D-2 ILLUMINA 1830159300 bp
SRR26949307 RNA-Seq of Litchi chinensis: 5 years old air laying potted MV treatment plant were rewarmed for 15 d\, replicate 1 with leaves from China:Guangzhou, Nuomici, MM78D-1 ILLUMINA 1393012800 bp
SRR26949308 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 63d\, sprayed with 60 µM MV\, replicate 2 with leaves from China:Guangzhou, Nuomici, MM63D-2 ILLUMINA 1863189600 bp
SRR26949309 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 63d\, sprayed with 60 µM MV\, replicate 1 with leaves from China:Guangzhou, Nuomici, MM63D-1 ILLUMINA 1467088200 bp
SRR26949310 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 33d\, sprayed with 60 µM MV\, replicate 2 with leaves from China:Guangzhou, Nuomici, MM33D-2 ILLUMINA 790154100 bp
SRR26949311 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 33d\, sprayed with 60 µM MV\, replicate 1 with leaves from China:Guangzhou, Nuomici, MM33D-1 ILLUMINA 1247055900 bp
SRR26949312 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 3d\, sprayed with water\, replicate 2 with leaves from China:Guangzhou, Nuomici, M3D-2 ILLUMINA 1205839500 bp
SRR26949313 RNA-Seq of Litchi chinensis: 5 years old air laying potted plant were transferred to a growth chamber at the time points of 3d\, sprayed with water\, replicate 1 with leaves from China:Guangzhou, Nuomici, M3D-1 ILLUMINA 1201266300 bp
PRJNA1071362 Rnaseq of embryonic callus -
15
Library Title Platform Total Base VCF File
SRR27843525 RNA-Seq of Litchi chinensis: 9d control treatment plant with embryonic callus from China:Haikou, Feizixiao, M3_9d_1 ILLUMINA 6523179300 bp
SRR27843526 RNA-Seq of Litchi chinensis: 0d control treatment plant with embryonic callus from China:Haikou, Feizixiao, M3_0d_3 ILLUMINA 6432474000 bp
SRR27843527 RNA-Seq of Litchi chinensis: 0d control treatment plant with embryonic callus from China:Haikou, Feizixiao, M3_0d_2 ILLUMINA 5988204600 bp
SRR27843528 RNA-Seq of Litchi chinensis: 0d control treatment plant with embryonic callus from China:Haikou, Feizixiao, M3_0d_1 ILLUMINA 6642153900 bp
SRR27843529 RNA-Seq of Litchi chinensis: 18d exogenous D-arginine treatment plant with embryonic callus from China:Haikou, Feizixiao, Ar3_18d_3 ILLUMINA 6362845500 bp
SRR27843530 RNA-Seq of Litchi chinensis: 18d exogenous D-arginine treatment plant with embryonic callus from China:Haikou, Feizixiao, Ar3_18d_2 ILLUMINA 6497626500 bp
SRR27843531 RNA-Seq of Litchi chinensis: 18d exogenous D-arginine treatment plant with embryonic callus from China:Haikou, Feizixiao, Ar3_18d_1 ILLUMINA 5673043500 bp
SRR27843532 RNA-Seq of Litchi chinensis: 9d exogenous D-arginine treatment plant with embryonic callus from China:Haikou, Feizixiao, Ar3_9d_3 ILLUMINA 6578913000 bp
SRR27843533 RNA-Seq of Litchi chinensis: 18d control treatment plant with embryonic callus from China:Haikou, Feizixiao, M3_18d_3 ILLUMINA 6036742500 bp
SRR27843534 RNA-Seq of Litchi chinensis: 18d control treatment plant with embryonic callus from China:Haikou, Feizixiao, M3_18d_2 ILLUMINA 6262200000 bp
SRR27843535 RNA-Seq of Litchi chinensis: 18d control treatment plant with embryonic callus from China:Haikou, Feizixiao, M3_18d_1 ILLUMINA 6742262400 bp
SRR27843536 RNA-Seq of Litchi chinensis: 9d control treatment plant with embryonic callus from China:Haikou, Feizixiao, M3_9d_3 ILLUMINA 6557478300 bp
SRR27843537 RNA-Seq of Litchi chinensis: 9d control treatment plant with embryonic callus from China:Haikou, Feizixiao, M3_9d_2 ILLUMINA 6471568800 bp
SRR27843538 RNA-Seq of Litchi chinensis: 9d exogenous D-arginine treatment plant with embryonic callus from China:Haikou, Feizixiao, Ar3_9d_2 ILLUMINA 6322468200 bp
SRR27843539 RNA-Seq of Litchi chinensis: 9d exogenous D-arginine treatment plant with embryonic callus from China:Haikou, Feizixiao, Ar3_9d_1 ILLUMINA 6278357100 bp
PRJNA268587 MicroRNAs and targets in senescent fruit of litchi during ambient storage and post cold storage shelf-life. -
1
Library Title Platform Total Base VCF File
SRR1663668 RNA-Seq of Litchi chinensis: plant mixed stages with fruit pericarp, GSM1554871 ILLUMINA 1619805700 bp
PRJNA307270 Litchi chinensis cultivar:Mauritius Transcriptome or Gene expression -
20
Library Title Platform Total Base VCF File
SRR3068321 RNA-Seq of Litchi chinensis: mesocarp W4-1-28-02.5 from USA: Miami FL, Mauritius, A1_4 ILLUMINA 9345420400 bp
SRR3068331 RNA-Seq of Litchi chinensis: seed W4-1-28-02.5 from USA: Miami FL, Mauritius, A1_7 ILLUMINA 8979105800 bp
SRR3068366 RNA-Seq of Litchi chinensis: leaf WA3-18-46OPS from USA: Miami FL, Brewster, Blue21 ILLUMINA 4175838600 bp
SRR3068367 RNA-Seq of Litchi chinensis: flower WA3-18-46OPS from USA: Miami FL, Brewster, B2_3 ILLUMINA 5952799600 bp
SRR3080054 RNA-Seq of Litchi chinensis: mesocarp Mauritius W4-1-28-02.5 from USA: Miami FL, Mauritius, A1_16 ILLUMINA 8572430600 bp
SRR3080055 RNA-Seq of Litchi chinensis: mesocarp Mauritius W4-1-28-02.5 from USA: Miami FL, Mauritius, A2_6 ILLUMINA 10104554200 bp
SRR3080056 RNA-Seq of Litchi chinensis: mesocarp Mauritius W4-1-28-02.5 from USA: Miami FL, Mauritius, A2_15 ILLUMINA 8856004600 bp
SRR3080057 RNA-Seq of Litchi chinensis: exocarp Mauritius W4-1-28-02.5 from USA: Miami FL, Mauritius, A1_14 ILLUMINA 8060261000 bp
SRR3080058 RNA-Seq of Litchi chinensis: exocarp Mauritius W4-1-28-02.5 from USA: Miami FL, Mauritius, A2_5 ILLUMINA 7689377400 bp
SRR3080059 RNA-Seq of Litchi chinensis: exocarp Mauritius W4-1-28-02.5 from USA: Miami FL, Mauritius, A2_13 ILLUMINA 10099312400 bp
SRR3080060 RNA-Seq of Litchi chinensis: seeds Mauritius W4-1-28-02.5 from USA: Miami FL, Mauritius, A1_18 ILLUMINA 7940540000 bp
SRR3080061 RNA-Seq of Litchi chinensis: seeds Mauritius W4-1-28-02.5 from USA: Miami FL, Mauritius, A2_12 ILLUMINA 7878906800 bp
SRR3080062 RNA-Seq of Litchi chinensis: seeds Mauritius W4-1-28-02.5 from USA: Miami FL, Mauritius, A2_19 ILLUMINA 7198258200 bp
SRR3068246 RNA-Seq of Litchi chinensis: leaf W4-1-28-02.5 from USA: Miami FL, Mauritius, Blue26 ILLUMINA 4553107200 bp
SRR3068294 RNA-Seq of Litchi chinensis: flower W4-1-28-02.5 from USA: Miami FL, Mauritius, B2_1 ILLUMINA 6215482200 bp
SRR3068310 RNA-Seq of Litchi chinensis: exocarp W4-1-28-02.5 from USA: Miami FL, Mauritius, A1_2 ILLUMINA 8321488400 bp
SRR3068368 RNA-Seq of Litchi chinensis: leaf WA3-24-67OPS from USA: Miami FL, Large Early Red, Blue20 ILLUMINA 3698822800 bp
SRR3068369 RNA-Seq of Litchi chinensis: flower WA3-24-67OPS from USA: Miami FL, Large Early Red, B2_10 ILLUMINA 6734776200 bp
SRR3068370 RNA-Seq of Litchi chinensis: leaf WA3-22-67OPS from USA: Miami FL, Tukhmia, Blue22 ILLUMINA 4612635800 bp
SRR3068372 RNA-Seq of Litchi chinensis: flower WA3-22-67OPS from USA: Miami FL, Tukhmia, B2_22 ILLUMINA 6391870200 bp
PRJNA326130 Later stage ovule specific transcriptome -
8
Library Title Platform Total Base VCF File
SRR3690779 RNA-Seq of Litchi chinensis: 16 DAA plant with ovule from India, Bedana, B16 ILLUMINA 3775318996 bp
SRR3690780 RNA-Seq of Litchi chinensis: 20 DAA plant with ovule from India, Bedana, B20 ILLUMINA 3675644924 bp
SRR3690789 RNA-Seq of Litchi chinensis: 24 DAA plant with ovule from India, Bedana, B24 ILLUMINA 4919379427 bp
SRR3690790 RNA-Seq of Litchi chinensis: 28 DAA plant with ovule from India, Bedana, B28 ILLUMINA 5452442984 bp
SRR3690791 RNA-Seq of Litchi chinensis: 16 DAA plant with ovule from India, China, C16 ILLUMINA 3480000046 bp
SRR3690792 RNA-Seq of Litchi chinensis: 20 DAA plant with ovule from India, China, C20 ILLUMINA 4356426334 bp
SRR3690793 RNA-Seq of Litchi chinensis: 24 DAA plant with ovule from India, China, C24 ILLUMINA 4747480356 bp
SRR3690804 RNA-Seq of Litchi chinensis: 28DAA plant with ovule from India, China, C28 ILLUMINA 4750514800 bp
PRJNA384098 Aimed to characterize genome-widely the miRNA population and phasiRNA-generating genes/loci in litchi (Litchi chinensis). -
2
Library Title Platform Total Base VCF File
SRR5478850 RNA-Seq of Litchi chinensis: adult tree with flower from China:ShenZhen, Huaizhi, Sample 12 ILLUMINA 23936219700 bp
SRR5478851 RNA-Seq of Litchi chinensis: adult tree with flower from China:ShenZhen, Huaizhi, Sample 11 ILLUMINA 24797705700 bp
PRJNA607382 Fruit abscission induced by carbohydrate stress in litchi was revealed by dynamic genome-wide transcriptome analysis. -
6
Library Title Platform Total Base VCF File
SRR11117527 RNA-Seq of Litchi chinensis: at 25 d after anthesis plant during dipping in 20 mg/L 2\,4-D for 1 min after girdling plus defoliation treatment withfruit abscission zone from China:Guangzhou, Feizixiao, day 1 ILLUMINA 554366890 bp
SRR11117528 RNA-Seq of Litchi chinensis: at 25 d after anthesis plant during girdling plus defoliation withfruit abscission zone from China:Guangzhou, Feizixiao, day 3 ILLUMINA 465490102 bp
SRR11117529 RNA-Seq of Litchi chinensis: at 25 d after anthesis plant during girdling plus defoliation withfruit abscission zone from China:Guangzhou, Feizixiao, day 2 ILLUMINA 427497756 bp
SRR11117530 RNA-Seq of Litchi chinensis: at 25 d after anthesis plant during girdling plus defoliation withfruit abscission zone from China:Guangzhou, Feizixiao, day 1 ILLUMINA 474375419 bp
SRR11117525 RNA-Seq of Litchi chinensis: at 25 d after anthesis plant during dipping in 20 mg/L 2\,4-D for 1 min after girdling plus defoliation treatment withfruit abscission zone from China:Guangzhou, Feizixiao, day 3 ILLUMINA 509026896 bp
SRR11117526 RNA-Seq of Litchi chinensis: at 25 d after anthesis plant during dipping in 20 mg/L 2\,4-D for 1 min after girdling plus defoliation treatment withfruit abscission zone from China:Guangzhou, Feizixiao, day 2 ILLUMINA 498950095 bp
PRJNA747875 The genome of cultivar 'Feizixiao' was assembled into 15 pseudo-chromosomes, totaling ~470 Mb. High heterozygosity (2.27%) resulted in two complete haplotypic assemblies. Hu et al., 2022
23
Library Title Platform Total Base VCF File
SRR15214154 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of Car-AZ ILLUMINA 4045254936 bp
SRR15214155 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of last_autumn_flush ILLUMINA 3577750774 bp
SRR15214156 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of floral'_primordium ILLUMINA 3927329001 bp
SRR15214157 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of panicle ILLUMINA 3494351052 bp
SRR15214158 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of aril_mixed ILLUMINA 3914285636 bp
SRR15214159 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of seed ILLUMINA 3906496566 bp
SRR15214160 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of root ILLUMINA 2821801635 bp
SRR15214161 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of pericarp ILLUMINA 5275197915 bp
SRR15214162 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of female_flowers_ovary ILLUMINA 4164332761 bp
SRR15214163 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of female_flowers_anther ILLUMINA 4128811794 bp
SRR15214165 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of male_flowers_ovary ILLUMINA 4062801543 bp
SRR15214166 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of embryo ILLUMINA 5389470112 bp
SRR15214167 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of male_flowers_anther ILLUMINA 2606388413 bp
SRR15214168 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of episperm ILLUMINA 5586837023 bp
SRR15214169 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of aril ILLUMINA 4816792845 bp
SRR15214170 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of Dec_leaf_buds ILLUMINA 4259436742 bp
SRR15214171 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of Car+AZ ILLUMINA 3896983917 bp
SRR15214262 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of callus ILLUMINA 4036760616 bp
SRR15214263 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of leaf ILLUMINA 3236682924 bp
SRR15214264 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of somatic_embryo ILLUMINA 3373828785 bp
SRR15214265 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of Sept_leaf_buds ILLUMINA 4981245263 bp
SRR15214266 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of flower_3 ILLUMINA 20553124336 bp
SRR15214267 RNA-Seq of Litchi chinensis: adult early maturing phenotype cultivated evengreen in productive stage hermaphrodite plant with leaf and leafbud from China:Guangdong, Feizixiao, PE library of flower_2 ILLUMINA 21172933255 bp
PRJNA779472 RNA-seq data of the pericarp of nine different varieties of Litchi chinensis -
27
Library Title Platform Total Base VCF File
SRR16916399 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 1" from China:Haikou\, Hainan, cdp ILLUMINA 6984835416 bp
SRR16916400 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 3" from China:Haikou\, Hainan, ccp ILLUMINA 6065010191 bp
SRR16916401 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 2" from China:Haikou\, Hainan, ccp ILLUMINA 7265223567 bp
SRR16916402 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 1" from China:Haikou\, Hainan, ccp ILLUMINA 5978578817 bp
SRR16916403 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 3" from China:Haikou\, Hainan, cbp ILLUMINA 6523524103 bp
SRR16916404 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 2" from China:Haikou\, Hainan, cbp ILLUMINA 6266544056 bp
SRR16916405 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 1" from China:Haikou\, Hainan, cbp ILLUMINA 6095620791 bp
SRR16916406 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 3" from China:Haikou\, Hainan, wdp ILLUMINA 5846390443 bp
SRR16916407 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 2" from China:Haikou\, Hainan, wdp ILLUMINA 5851451990 bp
SRR16916408 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 1" from China:Haikou\, Hainan, wdp ILLUMINA 6300024531 bp
SRR16916409 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 3" from China:Haikou\, Hainan, wcp ILLUMINA 5321747350 bp
SRR16916410 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 2" from China:Haikou\, Hainan, wcp ILLUMINA 6533048107 bp
SRR16916411 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 1" from China:Haikou\, Hainan, wcp ILLUMINA 5597941802 bp
SRR16916412 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 3" from China:Haikou\, Hainan, wbp ILLUMINA 5927833266 bp
SRR16916413 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 3" from China:Haikou\, Hainan, cap ILLUMINA 6485701512 bp
SRR16916414 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 2" from China:Haikou\, Hainan, wbp ILLUMINA 6367216415 bp
SRR16916415 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 1" from China:Haikou\, Hainan, wbp ILLUMINA 6910377414 bp
SRR16916416 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 3" from China:Haikou\, Hainan, wap ILLUMINA 6570937848 bp
SRR16916417 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 2" from China:Haikou\, Hainan, wap ILLUMINA 5796145030 bp
SRR16916418 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 1" from China:Haikou\, Hainan, wap ILLUMINA 5956372866 bp
SRR16916419 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 3" from China:Haikou\, Hainan, cep ILLUMINA 5997804931 bp
SRR16916420 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 2" from China:Haikou\, Hainan, cep ILLUMINA 6118535615 bp
SRR16916421 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 1" from China:Haikou\, Hainan, cep ILLUMINA 6146559386 bp
SRR16916422 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 3" from China:Haikou\, Hainan, cdp ILLUMINA 5901810194 bp
SRR16916423 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 2" from China:Haikou\, Hainan, cdp ILLUMINA 6934287987 bp
SRR16916424 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 2" from China:Haikou\, Hainan, cap ILLUMINA 6214594748 bp
SRR16916425 RNA-Seq of Litchi chinensis: ripe stage plant with percarp "replicate = biological replicate 1" from China:Haikou\, Hainan, cap ILLUMINA 5671235330 bp
PRJNA830488 The gene expression profiling analysis using data obtained from RNA-seq of 'Guiwei' and 'Yurong1'. -
12
Library Title Platform Total Base VCF File
SRR18856598 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment plant with leaves, Guiwei, GSM6053460 ILLUMINA 8107177500 bp
SRR18856599 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment plant with leaves, Guiwei, GSM6053459 ILLUMINA 8123463300 bp
SRR18856600 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment plant with leaves, Guiwei, GSM6053458 ILLUMINA 7114178100 bp
SRR18856601 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1x104 spores*mL-1) treatment plant with leaves, Yurong1, GSM6053469 ILLUMINA 6398343000 bp
SRR18856602 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1x104 spores*mL-1) treatment plant with leaves, Yurong1, GSM6053468 ILLUMINA 6957144900 bp
SRR18856603 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1x104 spores*mL-1) treatment plant with leaves, Yurong1, GSM6053467 ILLUMINA 6768861600 bp
SRR18856604 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment plant with leaves, Yurong1, GSM6053466 ILLUMINA 7065171900 bp
SRR18856605 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment plant with leaves, Yurong1, GSM6053465 ILLUMINA 7050288600 bp
SRR18856606 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment plant with leaves, Yurong1, GSM6053464 ILLUMINA 6874068000 bp
SRR18856607 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1x104 spores*mL-1) treatment plant with leaves, Guiwei, GSM6053463 ILLUMINA 7039303500 bp
SRR18856608 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1x104 spores*mL-1) treatment plant with leaves, Guiwei, GSM6053462 ILLUMINA 7413625800 bp
SRR18856609 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1x104 spores*mL-1) treatment plant with leaves, Guiwei, GSM6053461 ILLUMINA 8276786400 bp
PRJNA880983 To compare the different genes of organic acid metabolism during fruit development of two litchi cultivars Jiang et al., 2023
30
Library Title Platform Total Base VCF File
SRR21633366 RNA-Seq of Litchi chinensis: 30 years plant with HZ color transformation stage\,replicate 1 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS4_1 DNBSEQ 6441579300 bp
SRR21633367 RNA-Seq of Litchi chinensis: 30 years plant with HZ green ripening stage\,replicate 3 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS3_3 DNBSEQ 6303761100 bp
SRR21633368 RNA-Seq of Litchi chinensis: 30 years plant with HZ green ripening stage\,replicate 2 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS3_2 DNBSEQ 6536770200 bp
SRR21633369 RNA-Seq of Litchi chinensis: 30 years plant with HZ green ripening stage\,replicate 1 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS3_1 DNBSEQ 6460319700 bp
SRR21633370 RNA-Seq of Litchi chinensis: 30 years plant with HZ the expansion stage\,replicate 3 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS2_3 DNBSEQ 6515194200 bp
SRR21633371 RNA-Seq of Litchi chinensis: 30 years plant with HZ the expansion stage\,replicate 2 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS2_2 DNBSEQ 6471142800 bp
SRR21633372 RNA-Seq of Litchi chinensis: 30 years plant with HZ the expansion stage\,replicate 1 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS2_1 DNBSEQ 6424832700 bp
SRR21633373 RNA-Seq of Litchi chinensis: 30 years plant with B8 red ripening stage\,replicate 3 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S5_3 DNBSEQ 6361989300 bp
SRR21633374 RNA-Seq of Litchi chinensis: 30 years plant with B8 red ripening stage\,replicate 2 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S5_2 DNBSEQ 6329961000 bp
SRR21633375 RNA-Seq of Litchi chinensis: 30 years plant with B8 red ripening stage\,replicate 1 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S5_1 DNBSEQ 6459763500 bp
SRR21633376 RNA-Seq of Litchi chinensis: 30 years plant with B8 color transformation stage\,replicate 3 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S4_3 DNBSEQ 6331230300 bp
SRR21633377 RNA-Seq of Litchi chinensis: 30 years plant with B8 color transformation stage\,replicate 2 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S4_2 DNBSEQ 6530937600 bp
SRR21633378 RNA-Seq of Litchi chinensis: 30 years plant with B8 color transformation stage\,replicate 1 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S4_1 DNBSEQ 6477241800 bp
SRR21633379 RNA-Seq of Litchi chinensis: 30 years plant with B8 green ripening stage\,replicate 3 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S3_3 DNBSEQ 6346941000 bp
SRR21633380 RNA-Seq of Litchi chinensis: 30 years plant with B8 green ripening stage\,replicate 2 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S3_2 DNBSEQ 6309589800 bp
SRR21633381 RNA-Seq of Litchi chinensis: 30 years plant with B8 green ripening stage\,replicate 1 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S3_1 DNBSEQ 6467478600 bp
SRR21633382 RNA-Seq of Litchi chinensis: 30 years plant with B8 the expansion stage\,replicate 3 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S2_3 DNBSEQ 6487798800 bp
SRR21633383 RNA-Seq of Litchi chinensis: 30 years plant with HZ the first stage\,replicate 3 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS1_3 DNBSEQ 6293312400 bp
SRR21633384 RNA-Seq of Litchi chinensis: 30 years plant with B8 the expansion stage\,replicate 2 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S2_2 DNBSEQ 6323883900 bp
SRR21633385 RNA-Seq of Litchi chinensis: 30 years plant with B8 the expansion stage\,replicate 1 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S2_1 DNBSEQ 6470212500 bp
SRR21633386 RNA-Seq of Litchi chinensis: 30 years plant with B8 the first stage\,replicate 3 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S1_3 DNBSEQ 6459490800 bp
SRR21633387 RNA-Seq of Litchi chinensis: 30 years plant with B8 the first stage\,replicate 2 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S1_2 DNBSEQ 6518136900 bp
SRR21633388 RNA-Seq of Litchi chinensis: 30 years plant with B8 the first stage\,replicate 1 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Boye_No.8, B8S1_1 DNBSEQ 6478799700 bp
SRR21633389 RNA-Seq of Litchi chinensis: 30 years plant with HZ red ripening stage\,replicate 3 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS5_3 DNBSEQ 6541219500 bp
SRR21633390 RNA-Seq of Litchi chinensis: 30 years plant with HZ red ripening stage\,replicate 2 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS5_2 DNBSEQ 6272299200 bp
SRR21633391 RNA-Seq of Litchi chinensis: 30 years plant with HZ red ripening stage\,replicate 1 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS5_1 DNBSEQ 6456764100 bp
SRR21633392 RNA-Seq of Litchi chinensis: 30 years plant with HZ color transformation stage\,replicate 3 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS4_3 DNBSEQ 6532000500 bp
SRR21633393 RNA-Seq of Litchi chinensis: 30 years plant with HZ color transformation stage\,replicate 2 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS4_2 DNBSEQ 6537498600 bp
SRR21633394 RNA-Seq of Litchi chinensis: 30 years plant with HZ the first stage\,replicate 2 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS1_2 DNBSEQ 6418064100 bp
SRR21633395 RNA-Seq of Litchi chinensis: 30 years plant with HZ the first stage\,replicate 1 fruits from China: National Repository of Lychee and Banana Germplasm Resources\, Guangzhou ,Huaizhi, HZS1_1 DNBSEQ 6448536900 bp
PRJNA883943 Transcriptome analysis reveals key genes of catechins synthesis and regulation in litchi pericarp during fruit development Zhong et al., 2023
12
Library Title Platform Total Base VCF File
SRR21707713 RNA-Seq of Litchi chinensis: 60 days after flowering plant with pericarp biological replicate 9 from China:Guangzhou, lychee, R19071636_R1 ILLUMINA 5915168100 bp
SRR21707714 RNA-Seq of Litchi chinensis: 60 days after flowering plant with pericarp biological replicate 7 from China:Guangzhou, lychee, R19071635_R1 ILLUMINA 5446632300 bp
SRR21707715 RNA-Seq of Litchi chinensis: 30 days after flowering plant with pericarp biological replicate 5 from China:Guangzhou, lychee, R19071634_R1 ILLUMINA 6659181900 bp
SRR21707716 RNA-Seq of Litchi chinensis: 85 days after flowering plant with pericarp biological replicate 23 from China:Guangzhou, lychee, R19071643_R1 ILLUMINA 5737149300 bp
SRR21707717 RNA-Seq of Litchi chinensis: 85 days after flowering plant with pericarp biological replicate 21 from China:Guangzhou, lychee, R19071642_R1 ILLUMINA 5646607800 bp
SRR21707718 RNA-Seq of Litchi chinensis: 30 days after flowering plant with pericarp biological replicate 3 from China:Guangzhou, lychee, R19071633_R1 ILLUMINA 6159732300 bp
SRR21707719 RNA-Seq of Litchi chinensis: 85 days after flowering plant with pericarp biological replicate 19 from China:Guangzhou, lychee, R19071641_R1 ILLUMINA 5626244400 bp
SRR21707720 RNA-Seq of Litchi chinensis: 75 days after flowering plant with pericarp biological replicate 17 from China:Guangzhou, lychee, R19071640_R1 ILLUMINA 6431154900 bp
SRR21707721 RNA-Seq of Litchi chinensis: 75 days after flowering plant with pericarp biological replicate 15 from China:Guangzhou, lychee, R19071639_R1 ILLUMINA 5807465100 bp
SRR21707722 RNA-Seq of Litchi chinensis: 75 days after flowering plant with pericarp biological replicate 13 from China:Guangzhou, lychee, R19071638_R1 ILLUMINA 5734026600 bp
SRR21707723 RNA-Seq of Litchi chinensis: 60 days after flowering plant with pericarp biological replicate 11 from China:Guangzhou, lychee, R19071637_R1 ILLUMINA 6318767100 bp
SRR21707724 RNA-Seq of Litchi chinensis: 30 days after flowering plant with pericarp biological replicate 1 from China:Guangzhou, lychee, R19071632_R1 ILLUMINA 6281166600 bp
PRJNA906072 Transcriptome sequencing of ‘Feizixiao' litchi pulp at 35, 63 and 69 days after anthesis -
9
Library Title Platform Total Base VCF File
SRR22428096 RNA-Seq of Litchi chinensis: 69 DAA fruit pulp flesh cell, WT, GSM6758106 ILLUMINA 6772737600 bp
SRR22428097 RNA-Seq of Litchi chinensis: 69 DAA fruit pulp flesh cell, WT, GSM6758105 ILLUMINA 6385835700 bp
SRR22428098 RNA-Seq of Litchi chinensis: 69 DAA fruit pulp flesh cell, WT, GSM6758104 ILLUMINA 6323814900 bp
SRR22428099 RNA-Seq of Litchi chinensis: 63 DAA fruit pulp flesh cell, WT, GSM6758103 ILLUMINA 6791301600 bp
SRR22428100 RNA-Seq of Litchi chinensis: 63 DAA fruit pulp flesh cell, WT, GSM6758102 ILLUMINA 6953717100 bp
SRR22428101 RNA-Seq of Litchi chinensis: 63 DAA fruit pulp flesh cell, WT, GSM6758101 ILLUMINA 6883921800 bp
SRR22428102 RNA-Seq of Litchi chinensis: 35 DAA fruit pulp flesh cell, WT, GSM6758100 ILLUMINA 7043557800 bp
SRR22428103 RNA-Seq of Litchi chinensis: 35 DAA fruit pulp flesh cell, WT, GSM6758099 ILLUMINA 6645464700 bp
SRR22428104 RNA-Seq of Litchi chinensis: 35 DAA fruit pulp flesh cell, WT, GSM6758098 ILLUMINA 7043964000 bp
PRJNA922966 The gene expression profiling analysis using data obtained from RNA-seq of 'Feizixiao', the treated leaves and treated fruits were collected at 24 hpi. -
12
Library Title Platform Total Base VCF File
SRR23050939 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment fruits with , Feizixiao, GSM6928362 ILLUMINA 11693679436 bp
SRR23050940 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment fruits with , Feizixiao, GSM6928361 ILLUMINA 12021528776 bp
SRR23050941 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment fruits with , Feizixiao, GSM6928360 ILLUMINA 11438403354 bp
SRR23050942 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1 x 10^4 spores ml ^-1) treatment fruits with , Feizixiao, GSM6928359 ILLUMINA 10504629640 bp
SRR23050943 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1 x 10^4 spores ml ^-1) treatment fruits with , Feizixiao, GSM6928358 ILLUMINA 12883467090 bp
SRR23050944 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1 x 10^4 spores ml ^-1) treatment fruits with , Feizixiao, GSM6928357 ILLUMINA 11247616752 bp
SRR23050945 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment leaves with , Feizixiao, GSM6928356 ILLUMINA 13671878328 bp
SRR23050946 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment leaves with , Feizixiao, GSM6928355 ILLUMINA 11942924236 bp
SRR23050947 RNA-Seq of Litchi chinensis: 24h sterile water (mock inoculation) treatment leaves with , Feizixiao, GSM6928354 ILLUMINA 12774277852 bp
SRR23050948 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1 x 10^4 spores ml ^-1) treatment leaves with , Feizixiao, GSM6928353 ILLUMINA 11586633884 bp
SRR23050949 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1 x 10^4 spores ml ^-1) treatment leaves with , Feizixiao, GSM6928352 ILLUMINA 13111669600 bp
SRR23050950 RNA-Seq of Litchi chinensis: 24h inoculation with P.litchii ( 1 x 10^4 spores ml ^-1) treatment leaves with , Feizixiao, GSM6928351 ILLUMINA 10652132024 bp
PRJNA957845 Transcriptome and metabolome of litchi hairy roots overexpressing LcMYB1 -
6
Library Title Platform Total Base VCF File
SRR24234474 RNA-Seq of Litchi chinensis: red appears stage white hairy root biological replicate 3 from China, Heiye, AI404-ZX01-01-T06, 6 ILLUMINA 6731714834 bp
SRR24234475 RNA-Seq of Litchi chinensis: red appears stage white hairy root biological replicate 2 from China, Heiye, AI404-ZX01-01-T05, 5 ILLUMINA 6968129676 bp
SRR24234476 RNA-Seq of Litchi chinensis: red appears stage white hairy root biological replicate 1 from China, Heiye, AI404-ZX01-01-T04, 4 ILLUMINA 6722395442 bp
SRR24234477 RNA-Seq of Litchi chinensis: red appears overexpression of LcMYB1 stage red hairy root biological replicate 3 from China, Heiye, AI404-ZX01-01-T03, 3 ILLUMINA 6703247854 bp
SRR24234478 RNA-Seq of Litchi chinensis: red appears overexpression of LcMYB1 stage red hairy root biological replicate 2 from China, Heiye, AI404-ZX01-01-T02, 2 ILLUMINA 7308956696 bp
SRR24234479 RNA-Seq of Litchi chinensis: red appears overexpression of LcMYB1 stage red hairy root biological replicate 1 from China, Heiye, AI404-ZX01-01-T01, 1 ILLUMINA 6331288316 bp

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