Species Info.

Omics Data

Omics Analysis

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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA1047940 Transcriptome sequencing data of leaf root of Malus sieversii f.Niedzwetzkyana under saline-alkali stress -
18
Library Title Platform Total Base VCF File
SRR27028809 RNA-Seq of Malus sieversii: stress-free wild species plant with root replicate biologica X1 from China:Taian, RCK_1 ILLUMINA 6874486200 bp
SRR27028810 RNA-Seq of Malus sieversii: salt and alkali treatment 6h wild species plant with leaf replicate biologica X3 from China:Taian, LNa6h_3 ILLUMINA 6727573200 bp
SRR27028811 RNA-Seq of Malus sieversii: salt and alkali treatment 6h wild species plant with leaf replicate biologica X2 from China:Taian, LNa6h_2 ILLUMINA 6903323100 bp
SRR27028812 RNA-Seq of Malus sieversii: salt and alkali treatment 6h wild species plant with leaf replicate biologica X1 from China:Taian, LNa6h_1 ILLUMINA 6898371300 bp
SRR27028813 RNA-Seq of Malus sieversii: salt and alkali treatment 12h wild species plant with leaf replicate biologica X3 from China:Taian, LNa12h_3 ILLUMINA 6750371400 bp
SRR27028814 RNA-Seq of Malus sieversii: salt and alkali treatment 12h wild species plant with leaf replicate biologica X2 from China:Taian, LNa12h_2 ILLUMINA 6894661800 bp
SRR27028815 RNA-Seq of Malus sieversii: salt and alkali treatment 12h wild species plant with leaf replicate biologica X1 from China:Taian, LNa12h_1 ILLUMINA 6615371700 bp
SRR27028816 RNA-Seq of Malus sieversii: stress-free wild species plant with leaf replicate biologica X3 from China:Taian, LCK_3 ILLUMINA 7824363600 bp
SRR27028817 RNA-Seq of Malus sieversii: salt and alkali treatment 6h wild species plant with root replicate biologica X3 from China:Taian, RNa6h_3 ILLUMINA 6576486000 bp
SRR27028818 RNA-Seq of Malus sieversii: salt and alkali treatment 6h wild species plant with root replicate biologica X2 from China:Taian, RNa6h_2 ILLUMINA 6517533300 bp
SRR27028819 RNA-Seq of Malus sieversii: salt and alkali treatment 6h wild species plant with root replicate biologica X1 from China:Taian, RNa6h_1 ILLUMINA 6854845800 bp
SRR27028820 RNA-Seq of Malus sieversii: salt and alkali treatment 12h wild species plant with root replicate biologica X3 from China:Taian, RNa12h_3 ILLUMINA 6839197500 bp
SRR27028821 RNA-Seq of Malus sieversii: salt and alkali treatment 12h wild species plant with root replicate biologica X2 from China:Taian, RNa12h_2 ILLUMINA 6396103200 bp
SRR27028822 RNA-Seq of Malus sieversii: salt and alkali treatment 12h wild species plant with root replicate biologica X1 from China:Taian, RNa12h_1 ILLUMINA 6463046100 bp
SRR27028823 RNA-Seq of Malus sieversii: stress-free wild species plant with root replicate biologica X3 from China:Taian, RCK_3 ILLUMINA 6970343700 bp
SRR27028824 RNA-Seq of Malus sieversii: stress-free wild species plant with root replicate biologica X2 from China:Taian, RCK_2 ILLUMINA 7558674900 bp
SRR27028825 RNA-Seq of Malus sieversii: stress-free wild species plant with leaf replicate biologica X2 from China:Taian, LCK_2 ILLUMINA 7199788800 bp
SRR27028826 RNA-Seq of Malus sieversii: stress-free wild species plant with leaf replicate biologica X1 from China:Taian, LCK_1 ILLUMINA 7184091000 bp
PRJNA1060360 Malus sieversii (Ledeb.)Roem and Malus robusta Rehd. Raw sequence reads -
18
Library Title Platform Total Base VCF File
SRR27447388 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 9 from China: Xinjiang, S588, Mr_48h-3 DNBSEQ 6007360800 bp
SRR27447389 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 8 from China: Xinjiang, S587, Mr_48h-2 DNBSEQ 6005623500 bp
SRR27447390 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 7 from China: Xinjiang, S586, Mr_48h-1 DNBSEQ 6005435400 bp
SRR27447391 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 6 from China: Xinjiang, S585, Mr_24h-3 DNBSEQ 6001291200 bp
SRR27447392 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 5 from China: Xinjiang, S584, Mr_24h-2 DNBSEQ 6003667800 bp
SRR27447393 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 4 from China: Xinjiang, S583, Mr_24h-1 DNBSEQ 6002854200 bp
SRR27447394 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 27 from China: Xinjiang, S606, Mb2-9_48h-3 DNBSEQ 6006858600 bp
SRR27447395 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 26 from China: Xinjiang, S605, Mb2-9_48h-2 DNBSEQ 6007122600 bp
SRR27447396 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 25 from China: Xinjiang, S604, Mb2-9_48h-1 DNBSEQ 6007758900 bp
SRR27447397 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 24 from China: Xinjiang, S603, Mb2-9_24h-3 DNBSEQ 6004851900 bp
SRR27447398 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 23 from China: Xinjiang, S602, Mb2-9_24h-2 DNBSEQ 6001623900 bp
SRR27447399 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 22 from China: Xinjiang, S601, Mb2-9_24h-1 DNBSEQ 6007879500 bp
SRR27447400 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 21 from China: Xinjiang, S600, Mb2-9_0h-3 DNBSEQ 6001890300 bp
SRR27447401 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 3 from China: Xinjiang, S582, Mr_0h-3 DNBSEQ 6006246300 bp
SRR27447402 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 20 from China: Xinjiang, S599, Mb2-9_0h-2 DNBSEQ 6005924100 bp
SRR27447403 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 19 from China: Xinjiang, S598, Mb2-9_0h-1 DNBSEQ 6008668500 bp
SRR27447412 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 2 from China: Xinjiang, S581, Mr_0h-2 DNBSEQ 6006342900 bp
SRR27447413 RNA-Seq of Malus sieversii: stem segment replicate=biological replicate 1 from China: Xinjiang, S580, Mr_0h-1 DNBSEQ 6001857300 bp
PRJNA591623 Genome sequencing and assembly of apple variety 'Gala' and the two wild species, Malus sieversii and M. sylvestris -
4
Library Title Platform Total Base VCF File
SRR10538382 RNA-Seq of Malus sieversii: leaves from USA: Geneva, Sieversii skin ILLUMINA 3071404950 bp
SRR10538383 RNA-Seq of Malus sieversii: leaves from USA: Geneva, Sieversii leaves ILLUMINA 2538379066 bp
SRR10538384 RNA-Seq of Malus sieversii: leaves from USA: Geneva, Sieversii flower ILLUMINA 2531996270 bp
SRR10538385 RNA-Seq of Malus sieversii: leaves from USA: Geneva, Sieversii flesh ILLUMINA 2692158333 bp
PRJNA687214 A pacific biosciences (PacBio) full-length sequencing was adopted to identify differentially expressed transcripts (DETs) during the canker response stage aiming to explore the transcriptomic dynamics in M. sieversii to respond to the infection. Liu et al., 2021
24
Library Title Platform Total Base VCF File
SRR13288876 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 5dpi_rep3 from China: Xinjiang, WF_5dpi_3_PacBio PACBIO_SMRT 6765415500 bp
SRR13288877 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 5dpi_rep2 from China: Xinjiang, WF_5dpi_2_PacBio PACBIO_SMRT 5407137150 bp
SRR13288878 RNA-Seq of Malus sieversii: adult tree plant with twig normal control rep2 from China: Xinjiang, WW_0dpi_2_PacBio PACBIO_SMRT 7168978200 bp
SRR13288879 RNA-Seq of Malus sieversii: adult tree plant with twig normal control rep1 from China: Xinjiang, WW_0dpi_1_PacBio PACBIO_SMRT 7504097100 bp
SRR13288880 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 5dpi_rep1 from China: Xinjiang, WF_5dpi_1_PacBio PACBIO_SMRT 6939458400 bp
SRR13288881 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 2dpi_rep3 from China: Xinjiang, WF_2dpi_3_PacBio PACBIO_SMRT 7067773200 bp
SRR13288882 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 2dpi_rep2 from China: Xinjiang, WF_2dpi_2_PacBio PACBIO_SMRT 7652343900 bp
SRR13288883 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 2dpi_rep1 from China: Xinjiang, WF_2dpi_1_PacBio PACBIO_SMRT 6348280200 bp
SRR13288884 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 1dpi_rep3 from China: Xinjiang, WF_1dpi_3_PacBio PACBIO_SMRT 5755428900 bp
SRR13288885 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 1dpi_rep2 from China: Xinjiang, WF_1dpi_2_PacBio PACBIO_SMRT 6166213650 bp
SRR13288886 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 1dpi_rep1 from China: Xinjiang, WF_1dpi_1_PacBio PACBIO_SMRT 7795750950 bp
SRR13288887 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 5dpi_rep3 from China: Xinjiang, WF_5dpi_3_Illumina ILLUMINA 7835688900 bp
SRR13288888 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 5dpi_rep2 from China: Xinjiang, WF_5dpi_2_Illumina ILLUMINA 7634385900 bp
SRR13288889 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 5dpi_rep1 from China: Xinjiang, WF_5dpi_1_Illumina ILLUMINA 7961774100 bp
SRR13288890 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 2dpi_rep3 from China: Xinjiang, WF_2dpi_3_Illumina ILLUMINA 7704673650 bp
SRR13288891 RNA-Seq of Malus sieversii: adult tree plant with twig normal control rep3 from China: Xinjiang, WW_0dpi_3_PacBio PACBIO_SMRT 7843663950 bp
SRR13288892 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 2dpi_rep2 from China: Xinjiang, WF_2dpi_2_Illumina ILLUMINA 8141800200 bp
SRR13288893 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 2dpi_rep1 from China: Xinjiang, WF_2dpi_1_Illumina ILLUMINA 6886007400 bp
SRR13288894 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 1dpi_rep3 from China: Xinjiang, WF_1dpi_3_Illumina ILLUMINA 6144287100 bp
SRR13288895 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 1dpi_rep2 from China: Xinjiang, WF_1dpi_2_Illumina ILLUMINA 6560956650 bp
SRR13288896 RNA-Seq of Malus sieversii: adult tree plant with twig inoculated pathogen 1dpi_rep1 from China: Xinjiang, WF_1dpi_1_Illumina ILLUMINA 8250734850 bp
SRR13288897 RNA-Seq of Malus sieversii: adult tree plant with twig normal control rep3 from China: Xinjiang, WW_0dpi_3_Illumina ILLUMINA 8352726000 bp
SRR13288898 RNA-Seq of Malus sieversii: adult tree plant with twig normal control rep2 from China: Xinjiang, WW_0dpi_2_Illumina ILLUMINA 7702434750 bp
SRR13288899 RNA-Seq of Malus sieversii: adult tree plant with twig normal control rep1 from China: Xinjiang, WW_0dpi_1_Illumina ILLUMINA 8044703100 bp
PRJNA706196 The full-length transcriptome sequencing of Malus sieversii under freezing stress after being cold-acclimated Zhou et al., 2021
17
Library Title Platform Total Base VCF File
SRR13842405 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated\, - 4°C6h_1 seedling with leaf from China:xinjiang, LowTemperature_6h_1 ILLUMINA 7584576450 bp
SRR13842406 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated\, - 4°C1h_3 seedling with leaf from China:xinjiang, LowTemperature_1h_3 ILLUMINA 8908187250 bp
SRR13842407 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated\, - 4°C1h_2 seedling with leaf from China:xinjiang, LowTemperature_1h_2 ILLUMINA 8062805100 bp
SRR13842408 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated\, - 4°C1h_1 seedling with leaf from China:xinjiang, LowTemperature_1h_1 ILLUMINA 8313074250 bp
SRR13842409 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated\, - 4°C0h_3 seedling with leaf from China:xinjiang, LowTemperature_0h_3 ILLUMINA 7619272500 bp
SRR13842410 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated\, - 4°C0h_2 seedling with leaf from China:xinjiang, LowTemperature_0h_2 ILLUMINA 6985695000 bp
SRR13842411 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated - 4°C0h_1 seedling with leaf from China:xinjiang, LowTemperature_0h_1 ILLUMINA 8287194750 bp
SRR13842412 RNA-Seq of Malus sieversii: 3 month normal_3 seedling with leaf from China:xinjiang, Control_3 ILLUMINA 7786026150 bp
SRR13842413 RNA-Seq of Malus sieversii: 3 month control and stress of mixed samples seedling with leaf from China:xinjiang, Control and handling of mixed samples PACBIO_SMRT 1372294100 bp
SRR13842414 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated\, - 4°C10h_3 seedling with leaf from China:xinjiang, LowTemperature_10h_3 ILLUMINA 8312273100 bp
SRR13842415 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated\, - 4°C10h_2 seedling with leaf from China:xinjiang, LowTemperature_10h_2 ILLUMINA 6426938100 bp
SRR13842416 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated\, - 4°C10h_1 seedling with leaf from China:xinjiang, LowTemperature_10h_1 ILLUMINA 8289676200 bp
SRR13842417 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated\, - 4°C6h_3 seedling with leaf from China:xinjiang, LowTemperature_6h_3 ILLUMINA 7928965800 bp
SRR13842418 RNA-Seq of Malus sieversii: 3 month after two days of cold acclimated\, - 4°C6h_2 seedling with leaf from China:xinjiang, LowTemperature_6h_2 ILLUMINA 6817236450 bp
SRR13842419 RNA-Seq of Malus sieversii: 3 month normal_2 seedling with leaf from China:xinjiang, Control_2 ILLUMINA 7065376650 bp
SRR13842420 RNA-Seq of Malus sieversii: 3 month normal_1 seedling with leaf from China:xinjiang, Control_1 ILLUMINA 7938059250 bp
SRR14263414 RNA-Seq of Malus sieversii: 3 month control and stress of mixed samples seedling with leaf from China:xinjiang, Control and handling of mixed samples PACBIO_SMRT 432508752 bp
PRJNA736527 Following Malus sieversii induced by biocontrol agent Trichoderma, the transcriptome was used to analyze the expression of disease-resistance genes -
21
Library Title Platform Total Base VCF File
SRR16148355 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms10 ILLUMINA 9205282728 bp
SRR16148356 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms9 ILLUMINA 6674078438 bp
SRR16148357 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms8 ILLUMINA 7835864740 bp
SRR16148358 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms7 ILLUMINA 8284085106 bp
SRR16148359 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms6 ILLUMINA 7892335606 bp
SRR16148360 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms5 ILLUMINA 7683853574 bp
SRR16148361 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms4 ILLUMINA 7228976296 bp
SRR16148362 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms21 ILLUMINA 7993075848 bp
SRR16148363 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms3 ILLUMINA 7108351194 bp
SRR16148364 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms20 ILLUMINA 14204045122 bp
SRR16148365 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms19 ILLUMINA 6273037456 bp
SRR16148366 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms18 ILLUMINA 8486343824 bp
SRR16148367 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms17 ILLUMINA 7634552360 bp
SRR16148368 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms16 ILLUMINA 6300373346 bp
SRR16148369 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms15 ILLUMINA 8197498932 bp
SRR16148370 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms14 ILLUMINA 7787990370 bp
SRR16148371 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms13 ILLUMINA 7128287264 bp
SRR16148372 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms12 ILLUMINA 6608088086 bp
SRR16148373 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms11 ILLUMINA 7767025192 bp
SRR16148374 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms2 ILLUMINA 6823712934 bp
SRR16148375 RNA-Seq of Malus sieversii: induced by biocontrol agent trichoderma two month seedling whole plant from China: Ili, Ms1 ILLUMINA 6511468974 bp
PRJNA763361 RNA-seq sequencing of cultivar and wild apples -
13
Library Title Platform Total Base VCF File
SRR15928366 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from Kazakhstan, Sieversii, W-35 ILLUMINA 6546476880 bp
SRR15928380 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from Kyrgyzstan, Kirghisorum, W-23 ILLUMINA 5811160140 bp
SRR15928393 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from China, Xinjiang Wild Apple No.30, W-11 ILLUMINA 5223528000 bp
SRR15928394 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from China, Xinjiang Wild Apple No.28, W-10 ILLUMINA 5210473500 bp
SRR15928395 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from China, Xinjiang Wild Apple No.24, W-09 ILLUMINA 4723092000 bp
SRR15928396 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from China, Xinjiang Wild Apple No.22, W-08 ILLUMINA 5560380360 bp
SRR15928397 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from China, Xinjiang Wild Apple No.20, W-07 ILLUMINA 4392783900 bp
SRR15928398 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from China, Xinjiang Wild Apple No.19, W-06 ILLUMINA 5302440900 bp
SRR15928399 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from China, Xinjiang Wild Apple No.16, W-05 ILLUMINA 5255382960 bp
SRR15928400 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from China, Xinjiang Wild Apple No.10, W-04 ILLUMINA 6984218160 bp
SRR15928402 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from China, Xinjiang Wild Apple No.7, W-03 ILLUMINA 6675672240 bp
SRR15928403 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from China, Xinjiang Wild Apple No.3, W-02 ILLUMINA 6548085540 bp
SRR15928404 RNA-Seq of Malus sieversii: furit ripening stage plant with fruit flash from China, Xinjiang Wild Apple No.1, W-01 ILLUMINA 5429269620 bp
PRJNA872768 Apple pan genome SRA -
1
Library Title Platform Total Base VCF File
SRR21307583 RNA-Seq of Malus sieversii: young seedling plant with leaves 17 from China: Beijing, red wild apple, MSR-1 ILLUMINA 6363048600 bp

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