Omics-Seq

Project

Bioproject

Description

Publication

GVCF File

Library Num.

PRJNA290034

Specific transcriptomes of Picea glauca bark cells

Celedon et al., 2017

Library	Title	Platform	Total Base
SRR2134657	RNA-Seq of Picea glauca: cortical parenchyma from Canada:Vancouver, MJ_CP	ILLUMINA	13177001600 bp
SRR2134658	RNA-Seq of Picea glauca: cortical resin duct from Canada:Vancouver, MJ_CRD	ILLUMINA	15166246400 bp
SRR2134661	RNA-Seq of Picea glauca: bark from Canada:Vancouver, T_Bark_rep3	ILLUMINA	5325923800 bp
SRR2134662	RNA-Seq of Picea glauca: bark from Canada:Vancouver, T_Bark_rep4	ILLUMINA	5466848200 bp
SRR2134663	RNA-Seq of Picea glauca: phloem from Canada:Vancouver, MJ_Phlo	ILLUMINA	15945720800 bp
SRR2134667	RNA-Seq of Picea glauca: bark from Canada:Vancouver, MJ_Bark_rep1	ILLUMINA	5852570600 bp
SRR2134668	RNA-Seq of Picea glauca: bark from Canada:Vancouver, MJ_Bark_rep2	ILLUMINA	4880913400 bp
SRR2134670	RNA-Seq of Picea glauca: bark from Canada:Vancouver, MJ_Bark_rep4	ILLUMINA	4322904400 bp
SRR2134659	RNA-Seq of Picea glauca: bark from Canada:Vancouver, T_Bark_rep1	ILLUMINA	5370074600 bp
SRR2134660	RNA-Seq of Picea glauca: bark from Canada:Vancouver, T_Bark_rep2	ILLUMINA	5281556400 bp
SRR2134664	RNA-Seq of Picea glauca: cortical parenchyma from Canada:Vancouver, T_CP	ILLUMINA	17621368400 bp
SRR2134665	RNA-Seq of Picea glauca: cortical resin duct from Canada:Vancouver, T_CRD	ILLUMINA	15537170400 bp
SRR2134666	RNA-Seq of Picea glauca: phloem from Canada:Vancouver, T_Phlo	ILLUMINA	12091251800 bp
SRR2134669	RNA-Seq of Picea glauca: bark from Canada:Vancouver, MJ_Bark_rep3	ILLUMINA	4569998600 bp

PRJNA314134

RNA-seq of Picea glauca

Library	Title	Platform	Total Base
SRR3202527	RNA-Seq of Picea glauca x P. engelmannii x P. sitchensis: combined bark with phloem from multiple laterals, Sitka-White-Engelmann Spruce, SK_10_103_154_SUS_106	ILLUMINA	901474800 bp
SRR3202551	RNA-Seq of Picea glauca x P. engelmannii x P. sitchensis: combined bark with phloem from multiple laterals, Sitka-White-Engelmann Spruce, SK_10_61_238_UKN_052	ILLUMINA	2081396900 bp
SRR3202570	RNA-Seq of Picea glauca x P. engelmannii x P. sitchensis: combined bark with phloem from multiple laterals, Sitka-White-Engelmann Spruce, SK_11_208_149_SUS_132	ILLUMINA	2980452500 bp
SRR3202650	RNA-Seq of Picea glauca x P. engelmannii x P. sitchensis: combined bark with phloem from multiple laterals, Sitka-White-Engelmann Spruce, SK_14_202_153_CTRL_250	ILLUMINA	1097666100 bp
SRR3202651	RNA-Seq of Picea glauca x P. engelmannii x P. sitchensis: combined bark with phloem from multiple laterals, Sitka-White-Engelmann Spruce, SK_14_202_153_CTRL_250	ILLUMINA	1355873800 bp
SRR3202729	RNA-Seq of Picea glauca x P. engelmannii x P. sitchensis: combined bark with phloem from multiple laterals, Sitka-White-Engelmann Spruce, SK_7_181_190_SUS_182	ILLUMINA	2832395200 bp
SRR3202737	RNA-Seq of Picea glauca x P. engelmannii x P. sitchensis: combined bark with phloem from multiple laterals, Sitka-White-Engelmann Spruce, SK_7_217_261_SUS_148	ILLUMINA	1946220700 bp
SRR3202794	RNA-Seq of Picea glauca x P. engelmannii x P. sitchensis: combined bark with phloem from multiple laterals, Sitka-White-Engelmann Spruce, SK_9_24_291_SUS_020	ILLUMINA	1735885100 bp
SRR3202133	RNA-Seq of Picea glauca x P. engelmannii x P. sitchensis: bark with phloem from leader, Sitka-White-Engelmann_Spruce, HH_2_20_2_4_345_4	ILLUMINA	4318307000 bp
SRR3202156	RNA-Seq of Picea glauca x P. engelmannii x P. sitchensis: bark with phloem from leader, Sitka-White-Engelmann_Spruce, HH_22_29_7_16_345_1	ILLUMINA	3082730600 bp
SRR3202166	RNA-Seq of Picea glauca x P. engelmannii x P. sitchensis: bark with phloem from leader, Sitka-White-Engelmann_Spruce, HH_23_39_1_15_360_3	ILLUMINA	2975446600 bp
SRR3202539	RNA-Seq of Picea glauca: combined bark with phloem from multiple laterals, White Spruce, SK_10_178_208_TOL_056	ILLUMINA	744933300 bp
SRR3202589	RNA-Seq of Picea glauca: combined bark with phloem from multiple laterals, White Spruce, SK_12_118_136_TOL_216	ILLUMINA	2833421700 bp
SRR3202602	RNA-Seq of Picea glauca: combined bark with phloem from multiple laterals, White Spruce, SK_12_23_243_SUS_017	ILLUMINA	1607860700 bp
SRR3202746	RNA-Seq of Picea glauca: combined bark with phloem from multiple laterals, White Spruce, SK_7_84_274_TOL_034	ILLUMINA	474814900 bp
SRR3202045	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_1_25_7_7_390_1	ILLUMINA	4332734200 bp
SRR3202126	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_19_18_2_1_398_2	ILLUMINA	2459349600 bp
SRR3202129	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_19_36_7_14_388_4	ILLUMINA	2472668000 bp
SRR3202130	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_19_40_1_15_398_4	ILLUMINA	2152367000 bp
SRR3202136	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_20_26_2_5_402_2	ILLUMINA	4159026200 bp
SRR3202140	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_20_47_6_11_315_3	ILLUMINA	3075918400 bp
SRR3202148	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_21_37_1_15_368_1	ILLUMINA	3407738800 bp
SRR3202150	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_21_48_6_3_401_4	ILLUMINA	3072597200 bp
SRR3202159	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_22_45_6_3_327_1	ILLUMINA	3521109000 bp
SRR3202161	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_22_53_6_14_393_1	ILLUMINA	2370027000 bp
SRR3202162	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_23_17_2_1_379_1	ILLUMINA	2368599000 bp
SRR3202164	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_23_31_7_16_315_3	ILLUMINA	2513424600 bp
SRR3202168	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_23_45_6_3_325_1	ILLUMINA	2947572000 bp
SRR3202169	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_23_51_6_16_394_3	ILLUMINA	2490940200 bp
SRR3202171	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_24_18_2_1_388_2	ILLUMINA	2622670400 bp
SRR3202173	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_24_26_2_5_366_2	ILLUMINA	2965621600 bp
SRR3202175	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_24_34_7_10_358_2	ILLUMINA	3248618600 bp
SRR3202176	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_24_38_1_15_389_2	ILLUMINA	3004288600 bp
SRR3202179	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_24_50_6_16_382_2	ILLUMINA	3059374200 bp
SRR3202183	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_25_27_2_5_358_3	ILLUMINA	3021910400 bp
SRR3202309	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_4_21_2_9_325_1	ILLUMINA	3673106800 bp
SRR3202313	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_4_50_6_1_385_2	ILLUMINA	5094832800 bp
SRR3202393	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_5_38_1_11_392_2	ILLUMINA	4764105400 bp
SRR3202484	RNA-Seq of Picea glauca: bark with phloem from leader, White_Spruce, HH_6_41_1_1_379_1	ILLUMINA	4482819400 bp

PRJNA353540

Wildtype Picea glauca transcriptome or gene expression

Rutledge et al., 2017

Library	Title	Platform	Total Base
SRR5036204	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S7	ION_TORRENT	1241803170 bp
SRR5036205	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S8	ION_TORRENT	1081748892 bp
SRR5036206	RNA-Seq of Picea glauca: tissue in culture from Canada: Quebec, S26	ION_TORRENT	1562601675 bp
SRR5036207	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S13	ION_TORRENT	1376059900 bp
SRR5036208	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S18	ION_TORRENT	884824765 bp
SRR5036209	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S11	ION_TORRENT	2034676103 bp
SRR5036210	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S24	ION_TORRENT	1370219187 bp
SRR5036211	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S17	ION_TORRENT	1882035797 bp
SRR5036212	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S5	ION_TORRENT	1460967575 bp
SRR5036213	RNA-Seq of Picea glauca: tissue in culture from Canada: Quebec, S27	ION_TORRENT	1509815578 bp
SRR5036214	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S2	ION_TORRENT	1481296522 bp
SRR5036215	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S1	ION_TORRENT	1900650236 bp
SRR5036216	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S3	ION_TORRENT	1400875624 bp
SRR5036217	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S12	ION_TORRENT	1585779733 bp
SRR5036218	RNA-Seq of Picea glauca: tissue in culture from Canada: Quebec, S29	ION_TORRENT	1929332764 bp
SRR5036219	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S14	ION_TORRENT	1522556434 bp
SRR5036220	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S16	ION_TORRENT	1656580476 bp
SRR5036221	RNA-Seq of Picea glauca: tissue in culture from Canada: Quebec, S25	ION_TORRENT	1459299620 bp
SRR5036222	RNA-Seq of Picea glauca: tissue in culture from Canada: Quebec, S30	ION_TORRENT	1427506847 bp
SRR5036223	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S9	ION_TORRENT	1341278668 bp
SRR5036224	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S21	ION_TORRENT	1662700863 bp
SRR5036225	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S10	ION_TORRENT	1887553493 bp
SRR5036226	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S6	ION_TORRENT	978257351 bp
SRR5036227	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S23	ION_TORRENT	1804945902 bp
SRR5036228	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S15	ION_TORRENT	1559374199 bp
SRR5036229	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S22	ION_TORRENT	1674025907 bp
SRR5036230	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S19	ION_TORRENT	1132484338 bp
SRR5036232	RNA-Seq of Picea glauca: tissue in culture from Canada: Quebec, S28	ION_TORRENT	1418196077 bp
SRR5036233	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S20	ION_TORRENT	1145380038 bp
SRR5036234	RNA-Seq of Picea glauca: primordial shoot from Canada: Quebec, S4	ION_TORRENT	1657588254 bp

PRJNA413418

RNA-seq of Picea glauca

Swenson et al., 1996

Library	Title	Platform	Total Base
SRR6134207	RNA-Seq of Picea glauca: leaf from USA: Michigan, Sitka-White-Engelmann Spruce, NGS_WL_102	ILLUMINA	4292753600 bp
SRR6134213	RNA-Seq of Picea glauca: leaf from USA: Michigan, Sitka-White-Engelmann Spruce, NGS_WL_98	ILLUMINA	4375501600 bp
SRR6134147	RNA-Seq of Picea glauca: leaf from USA: Michigan, White Spruce, NGS_WL_103	ILLUMINA	4295075800 bp
SRR6134206	RNA-Seq of Picea glauca: leaf from USA: Michigan, White Spruce, NGS_WL_101	ILLUMINA	4288880400 bp
SRR6134214	RNA-Seq of Picea glauca: leaf from USA: Michigan, White Spruce, NGS_WL_99	ILLUMINA	4290976400 bp
SRR6134215	RNA-Seq of Picea glauca: leaf from USA: Michigan, NGS_WL_100	ILLUMINA	4235736200 bp

PRJNA551096

Transcriptomic raw data of Picea glauca

Shao et al., 2019

Library	Title	Platform	Total Base	VCF File
SRR9595763	RNA-Seq of Picea glauca: endosperm from USA: Minnesota, P_glaEN142	ILLUMINA	9235920672 bp
SRR9595772	RNA-Seq of Picea glauca: endosperm from USA: Minnesota, P_glaEN173	ILLUMINA	7228209312 bp

PRJNA732083

Transcriptomic analysis of developing somatic embryos under different temperature in Picea glauca

Cui et al., 2021

Library	Title	Platform	Total Base
SRR14626024	RNA-Seq of Picea glauca: immature somatic embryos from Canada, TCA2-3	ILLUMINA	7292203500 bp
SRR14626025	RNA-Seq of Picea glauca: immature somatic embryos from Canada, TCA2-2	ILLUMINA	7193622300 bp
SRR14626026	RNA-Seq of Picea glauca: immature somatic embryos from Canada, TMA0-2	ILLUMINA	7125621600 bp
SRR14626027	RNA-Seq of Picea glauca: immature somatic embryos from Canada, TMA0-1	ILLUMINA	7221912000 bp
SRR14626028	RNA-Seq of Picea glauca: immature somatic embryos from Canada, TCA2-1	ILLUMINA	7381459500 bp
SRR14626029	RNA-Seq of Picea glauca: mature somatic embryos from Canada, TMA4-3	ILLUMINA	7171121700 bp
SRR14626030	RNA-Seq of Picea glauca: mature somatic embryos from Canada, TMA4-2	ILLUMINA	7324585800 bp
SRR14626031	RNA-Seq of Picea glauca: mature somatic embryos from Canada, TMA4-1	ILLUMINA	7154140200 bp
SRR14626032	RNA-Seq of Picea glauca: immature somatic embryos from Canada, TMA2-3	ILLUMINA	7199284800 bp
SRR14626033	RNA-Seq of Picea glauca: immature somatic embryos from Canada, TMA2-2	ILLUMINA	7180173000 bp
SRR14626034	RNA-Seq of Picea glauca: immature somatic embryos from Canada, TMA2-1	ILLUMINA	7424107800 bp
SRR14626035	RNA-Seq of Picea glauca: immature somatic embryos from Canada, TMA0-3	ILLUMINA	7098173100 bp
SRR14626036	RNA-Seq of Picea glauca: immatue somatic embryos from Canada, TCA10-3	ILLUMINA	7014039900 bp
SRR14626037	RNA-Seq of Picea glauca: immatue somatic embryos from Canada, TCA10-2	ILLUMINA	7234943700 bp
SRR14626038	RNA-Seq of Picea glauca: immatue somatic embryos from Canada, TCA10-1	ILLUMINA	7052340900 bp
SRR14626039	RNA-Seq of Picea glauca: immatue somatic embryos from Canada, TCA4-3	ILLUMINA	7038294000 bp
SRR14626040	RNA-Seq of Picea glauca: immatue somatic embryos from Canada, TCA4-2	ILLUMINA	7015995900 bp
SRR14626041	RNA-Seq of Picea glauca: immatue somatic embryos from Canada, TCA4-1	ILLUMINA	7071510300 bp

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