Species Info.

Omics Data

Omics Analysis

Seq. Analysis
Omics Analysis
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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA398042 RNA-seq of Picea sitchensis stone cells Whitehill et al., 2021
1057
Library Title Platform Total Base VCF File
SRR5949079 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the active feeding galleries of white pine weevil (wpw) larvae. approximately 2 cm of tissue surrounding the active leading edge of wpw feeding galleries were isolated for ... from Canada: Vancouver, H898, H898_W ILLUMINA 7843953400 bp
SRR5949080 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the active feeding galleries of white pine weevil (wpw) larvae. approximately 2 cm of tissue surrounding the active leading edge of wpw feeding galleries were isolated for ... from Canada: Vancouver, H898, H898_W ILLUMINA 10264731600 bp
SRR5949081 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader. from Canada: Vancouver, Q903, Q903_C ILLUMINA 9203154800 bp
SRR5949082 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader. from Canada: Vancouver, Q903, Q903_C ILLUMINA 9501016200 bp
SRR5949083 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader. from Canada: Vancouver, Q903, Q903_C ILLUMINA 8782822200 bp
SRR5949084 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader. from Canada: Vancouver, Q903, Q903_C ILLUMINA 9057953400 bp
SRR5949085 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader around artificial wound sites. from Canada: Vancouver, Q903, Q903_G ILLUMINA 9528246600 bp
SRR5949086 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader around artificial wound sites. from Canada: Vancouver, Q903, Q903_G ILLUMINA 9796932200 bp
SRR5949087 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader around artificial wound sites. from Canada: Vancouver, Q903, Q903_G ILLUMINA 7942419000 bp
SRR5949088 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader around artificial wound sites. from Canada: Vancouver, Q903, Q903_G ILLUMINA 7412849200 bp
SRR5949089 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the active feeding galleries of white pine weevil (wpw) larvae. approximately 2 cm of tissue surrounding the active leading edge of wpw feeding galleries were isolated for ... from Canada: Vancouver, Q903, Q903_W ILLUMINA 9565480000 bp
SRR5949090 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the active feeding galleries of white pine weevil (wpw) larvae. approximately 2 cm of tissue surrounding the active leading edge of wpw feeding galleries were isolated for ... from Canada: Vancouver, Q903, Q903_W ILLUMINA 9056683600 bp
SRR5949091 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the active feeding galleries of white pine weevil (wpw) larvae. approximately 2 cm of tissue surrounding the active leading edge of wpw feeding galleries were isolated for ... from Canada: Vancouver, Q903, Q903_W ILLUMINA 9827273200 bp
SRR5949092 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the active feeding galleries of white pine weevil (wpw) larvae. approximately 2 cm of tissue surrounding the active leading edge of wpw feeding galleries were isolated for ... from Canada: Vancouver, Q903, Q903_W ILLUMINA 7901718800 bp
SRR5949093 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader. from Canada: Vancouver, H898, H898_C ILLUMINA 8766743000 bp
SRR5949094 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader. from Canada: Vancouver, H898, H898_C ILLUMINA 8403287200 bp
SRR5949095 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader. from Canada: Vancouver, H898, H898_C ILLUMINA 8761125800 bp
SRR5949096 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader. from Canada: Vancouver, H898, H898_C ILLUMINA 9950943400 bp
SRR5949097 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader around artificial wound sites. from Canada: Vancouver, H898, H898_G ILLUMINA 7573167200 bp
SRR5949098 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader around artificial wound sites. from Canada: Vancouver, H898, H898_G ILLUMINA 7784665200 bp
SRR5949099 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader around artificial wound sites. from Canada: Vancouver, H898, H898_G ILLUMINA 8309405600 bp
SRR5949100 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the top 2 cm underneath the junction between the apical leader and secondar years leader around artificial wound sites. from Canada: Vancouver, H898, H898_G ILLUMINA 9242055200 bp
SRR5949101 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the active feeding galleries of white pine weevil (wpw) larvae. approximately 2 cm of tissue surrounding the active leading edge of wpw feeding galleries were isolated for ... from Canada: Vancouver, H898, H898_W ILLUMINA 8704484000 bp
SRR5949102 RNA-Seq of Picea sitchensis: second years (penultimate) terminal leader/main stem material was harvested from the active feeding galleries of white pine weevil (wpw) larvae. approximately 2 cm of tissue surrounding the active leading edge of wpw feeding galleries were isolated for ... from Canada: Vancouver, H898, H898_W ILLUMINA 9153350600 bp
PRJNA551096 Transcriptomic raw data of Picea sitchensis Shao et al., 2019
1058
Library Title Platform Total Base VCF File
SRR9595751 RNA-Seq of Picea sitchensis: endosperm from USA: Oregon, P_sitEN177 ILLUMINA 3469157640 bp
SRR9595752 RNA-Seq of Picea sitchensis: needles from USA: Oregon, P_sitSE070 ILLUMINA 3985174728 bp
SRR9595791 RNA-Seq of Picea sitchensis: endosperm from USA: Oregon, P_sitEN025 ILLUMINA 6870906864 bp
PRJNA725516 RNA-seq of Picea sitchensis stone cell biogenesis in conifers Whitehill et al., 2023
1059
Library Title Platform Total Base VCF File
SRR14424506 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 750 growing degree days) from Canada:Vancouver, 903_A7-4 ILLUMINA 9847046106 bp
SRR14424507 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 750 growing degree days) from Canada:Vancouver, 898_A7-3 ILLUMINA 9800909912 bp
SRR14424508 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 750 growing degree days) from Canada:Vancouver, 898_A7-2 ILLUMINA 12196335598 bp
SRR14424509 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 750 growing degree days) from Canada:Vancouver, 898_A7-1 ILLUMINA 19100202920 bp
SRR14424510 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 600 growing degree days) from Canada:Vancouver, 903_A6-4 ILLUMINA 16862890916 bp
SRR14424511 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 600 growing degree days) from Canada:Vancouver, 903_A6-2 ILLUMINA 24858875682 bp
SRR14424512 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 600 growing degree days) from Canada:Vancouver, 903_A6-1 ILLUMINA 11523278264 bp
SRR14424513 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 1000 growing degree days) from Canada:Vancouver, 903_A10-4 ILLUMINA 10359003996 bp
SRR14424514 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 1000 growing degree days) from Canada:Vancouver, 903_A10-3 ILLUMINA 12078695444 bp
SRR14424515 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 1000 growing degree days) from Canada:Vancouver, 903_A10-1 ILLUMINA 13184572522 bp
SRR14424516 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 1000 growing degree days) from Canada:Vancouver, 898_A10-4 ILLUMINA 10182073004 bp
SRR14424517 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 600 growing degree days) from Canada:Vancouver, 898_A6-3 ILLUMINA 11307812742 bp
SRR14424518 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 1000 growing degree days) from Canada:Vancouver, 898_A10-3 ILLUMINA 10884237124 bp
SRR14424519 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 1000 growing degree days) from Canada:Vancouver, 898_A10-1 ILLUMINA 14998167912 bp
SRR14424520 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 900 growing degree days) from Canada:Vancouver, 903_A8-3 ILLUMINA 10258591210 bp
SRR14424521 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 900 growing degree days) from Canada:Vancouver, 903_A8-2 ILLUMINA 11494034320 bp
SRR14424522 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 900 growing degree days) from Canada:Vancouver, 903_A8-1 ILLUMINA 10673103492 bp
SRR14424523 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 900 growing degree days) from Canada:Vancouver, 898_A8-4 ILLUMINA 11487429930 bp
SRR14424524 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 900 growing degree days) from Canada:Vancouver, 898_A8-3 ILLUMINA 10184164512 bp
SRR14424525 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 900 growing degree days) from Canada:Vancouver, 898_A8-1 ILLUMINA 10762067120 bp
SRR14424526 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 750 growing degree days) from Canada:Vancouver, 903_A7-8 ILLUMINA 15259910018 bp
SRR14424527 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 750 growing degree days) from Canada:Vancouver, 903_A7-7 ILLUMINA 12818709112 bp
SRR14424528 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 600 growing degree days) from Canada:Vancouver, 898_A6-2 ILLUMINA 13700976028 bp
SRR14424529 RNA-Seq of Picea sitchensis: current years apical shoot tip (top 2 cm of expanding shoot collected @ 600 growing degree days) from Canada:Vancouver, 898_A6-1 ILLUMINA 11875602220 bp
SRR14336943 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 898_DSC_rep1 ILLUMINA 3182869600 bp
SRR14336944 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 898_CP_rep3 ILLUMINA 2791810200 bp
SRR14336945 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 898_CP_rep3 ILLUMINA 2812137600 bp
SRR14336946 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 898_CP_rep3 ILLUMINA 2791332000 bp
SRR14336947 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 898_CP_rep2 ILLUMINA 4130956000 bp
SRR14336948 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 898_CP_rep2 ILLUMINA 4157926600 bp
SRR14336949 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 903_DSC_rep3 ILLUMINA 2997196200 bp
SRR14336950 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 903_DSC_rep3 ILLUMINA 3017648000 bp
SRR14336951 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 903_DSC_rep3 ILLUMINA 3000201000 bp
SRR14336952 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 903_DSC_rep2 ILLUMINA 4245738000 bp
SRR14336953 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 903_DSC_rep2 ILLUMINA 4277642000 bp
SRR14336954 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 903_DSC_rep2 ILLUMINA 4234589600 bp
SRR14336955 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 898_CP_rep2 ILLUMINA 4117725400 bp
SRR14336956 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 903_DSC_rep1 ILLUMINA 3065266800 bp
SRR14336957 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 903_DSC_rep1 ILLUMINA 3086966000 bp
SRR14336958 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 903_DSC_rep1 ILLUMINA 3055657200 bp
SRR14336959 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 903_CP_rep3 ILLUMINA 2729260200 bp
SRR14336960 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 903_CP_rep3 ILLUMINA 2747827800 bp
SRR14336961 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 903_CP_rep3 ILLUMINA 2723818000 bp
SRR14336962 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 903_CP_rep2 ILLUMINA 3117338600 bp
SRR14336963 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 903_CP_rep2 ILLUMINA 3139172600 bp
SRR14336964 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 903_CP_rep2 ILLUMINA 3108939600 bp
SRR14336965 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 903_CP_rep1 ILLUMINA 2591454400 bp
SRR14336966 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 898_CP_rep1 ILLUMINA 3094404800 bp
SRR14336967 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 903_CP_rep1 ILLUMINA 2607077000 bp
SRR14336968 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 903_CP_rep1 ILLUMINA 2569000400 bp
SRR14336969 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 898_DSC_rep3 ILLUMINA 3591511200 bp
SRR14336970 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 898_DSC_rep3 ILLUMINA 3619105800 bp
SRR14336971 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 898_DSC_rep3 ILLUMINA 3598012600 bp
SRR14336972 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 898_DSC_rep2 ILLUMINA 3591473600 bp
SRR14336973 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 898_DSC_rep2 ILLUMINA 3617866800 bp
SRR14336974 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 898_DSC_rep2 ILLUMINA 3591155400 bp
SRR14336975 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 898_DSC_rep1 ILLUMINA 3194272800 bp
SRR14336976 RNA-Seq of Picea sitchensis: developing stone cell from Canada:Vancouver, 898_DSC_rep1 ILLUMINA 3217140600 bp
SRR14336977 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 898_CP_rep1 ILLUMINA 3118499600 bp
SRR14336978 RNA-Seq of Picea sitchensis: cortical parenchyma from Canada:Vancouver, 898_CP_rep1 ILLUMINA 3083644800 bp

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