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Project

Bioproject Description Publication GVCF File Library Num.
PRJNA639011 RNA-Seq sequencing of shrub willow genotypes under salinity stress Sui et al., 2020
18
Library Title Platform Total Base VCF File
SRR12001242 RNA-Seq of Salix purpurea: 6 weeks old seedling from China: Nanjing, JW2372_0h_3 ILLUMINA 8135682300 bp
SRR12001243 RNA-Seq of Salix purpurea: 6 weeks old seedling from China: Nanjing, JW2372_0h_2 ILLUMINA 10155482400 bp
SRR12001244 RNA-Seq of Salix purpurea: 6 weeks old seedling from China: Nanjing, JW9-6_0h_2 ILLUMINA 7494254700 bp
SRR12001245 RNA-Seq of Salix purpurea: 6 weeks old seedling from China: Nanjing, JW9-6_0h_1 ILLUMINA 7527763200 bp
SRR12001246 RNA-Seq of Salix purpurea: 6 weeks old seedling from China: Nanjing, JW2372_0h_1 ILLUMINA 8968577700 bp
SRR12001247 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 3% NaCl from China: Nanjing, JW9-6_12h_3 ILLUMINA 8327412900 bp
SRR12001248 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 4% NaCl from China: Nanjing, JW9-6_12h_2 ILLUMINA 10500659100 bp
SRR12001249 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 5% NaCl from China: Nanjing, JW9-6_12h_1 ILLUMINA 7872220800 bp
SRR12001250 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 6% NaCl from China: Nanjing, JW9-6_2h_3 ILLUMINA 9006724200 bp
SRR12001251 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 7% NaCl from China: Nanjing, JW9-6_2h_2 ILLUMINA 7732640700 bp
SRR12001252 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 8% NaCl from China: Nanjing, JW9-6_2h_1 ILLUMINA 7470663600 bp
SRR12001253 RNA-Seq of Salix purpurea: 6 weeks old seedling from China: Nanjing, JW9-6_0h_3 ILLUMINA 8370304200 bp
SRR12001254 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 3% NaCl from China: Nanjing, JW2372_12h_3 ILLUMINA 7877024700 bp
SRR12001255 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 3% NaCl from China: Nanjing, JW2372_12h_2 ILLUMINA 9385128000 bp
SRR12001256 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 3% NaCl from China: Nanjing, JW2372_12h_1 ILLUMINA 7696260900 bp
SRR12001257 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 3% NaCl from China: Nanjing, JW2372_2h_3 ILLUMINA 8346049500 bp
SRR12001258 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 3% NaCl from China: Nanjing, JW2372_2h_2 ILLUMINA 10054172700 bp
SRR12001259 RNA-Seq of Salix purpurea: 6 weeks old seedling planted in each ampulla1/4 Hoagland nutrient solution including 3% NaCl from China: Nanjing, JW2372_2h_1 ILLUMINA 8420272800 bp
PRJNA827350 11 F1 Salix sequence data Hyden et al., 2023
16
Library Title Platform Total Base VCF File
SRR18795294 RNA-Seq of Salix purpurea: young stem, 94006Youngstem_dnb_seq_rna_lib DNBSEQ 7395125700 bp
SRR18795295 RNA-Seq of Salix purpurea: young leaf, 94006Youngleaf_dnb_seq_rna_lib DNBSEQ 6274491900 bp
SRR18795297 RNA-Seq of Salix purpurea: xylem, 94006Xylem_dnb_seq_rna_lib DNBSEQ 7165172400 bp
SRR18795298 RNA-Seq of Salix purpurea: root, 94006Root_dnb_seq_rna_lib DNBSEQ 6224858400 bp
SRR18795299 RNA-Seq of Salix purpurea: petioles, 94006Petioles_dnb_seq_rna_lib DNBSEQ 7240830600 bp
SRR18795300 RNA-Seq of Salix purpurea: nodes, 94006Nodes_dnb_seq_rna_lib DNBSEQ 7130639100 bp
SRR18795301 RNA-Seq of Salix purpurea: matureleaves, 94006Matureleaves_dnb_seq_rna_lib DNBSEQ 7152536700 bp
SRR18795302 RNA-Seq of Salix purpurea: internodes, 94006Internodes_dnb_seq_rna_lib DNBSEQ 7245117300 bp
SRR18795303 RNA-Seq of Salix purpurea: young stem, 94001Youngstem_dnb_seq_rna_lib DNBSEQ 7254288300 bp
SRR18795304 RNA-Seq of Salix purpurea: youngleaf, 94001Youngleaf_dnb_seq_rna_lib DNBSEQ 6242366400 bp
SRR18795305 RNA-Seq of Salix purpurea: xylem, 94001Xylem_dnb_seq_rna_lib DNBSEQ 7098124800 bp
SRR18795306 RNA-Seq of Salix purpurea: root, 94001Root_dnb_seq_rna_lib DNBSEQ 6256401600 bp
SRR18795308 RNA-Seq of Salix purpurea: petioles, 94001Petioles_dnb_seq_rna_lib DNBSEQ 7241316900 bp
SRR18795309 RNA-Seq of Salix purpurea: nodes, 94001Nodes_dnb_seq_rna_lib DNBSEQ 7207875300 bp
SRR18795310 RNA-Seq of Salix purpurea: matureleaves, 94001Matureleaves_dnb_seq_rna_lib DNBSEQ 7242819900 bp
SRR18795311 RNA-Seq of Salix purpurea: internodes, 94001Internodes_dnb_seq_rna_lib DNBSEQ 7149678300 bp
PRJNA887710 RNA-Seq of emerging catkins from select male, female, and monoecious progeny from an S2, female outcross, and male outcross families generated from a monoecious parent -
24
Library Title Platform Total Base VCF File
SRR21823137 RNA-Seq of Salix purpurea: female outcross progeny male plant with emerging catkin from USA:NY, 13437_32540_166624_HGCCFBGXM_plate_1_B02_19X_232_078_TTGGTA ILLUMINA 1121916440 bp
SRR21823138 RNA-Seq of Salix purpurea: female outcross progeny male plant with emerging catkin from USA:NY, 13437_32540_166623_HGCCFBGXM_plate_1_A02_19X_232_056_AGATAG ILLUMINA 895812206 bp
SRR21823139 RNA-Seq of Salix purpurea: female outcross progeny female plant with emerging catkin from USA:NY, 13437_32540_166622_HGCCFBGXM_plate_1_H01_19X_232_054_CGAAGG ILLUMINA 989659104 bp
SRR21823140 RNA-Seq of Salix purpurea: female outcross progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166621_HGCCFBGXM_plate_1_G01_19X_232_044_ACCTAC ILLUMINA 724489628 bp
SRR21823141 RNA-Seq of Salix purpurea: female outcross progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166620_HGCCFBGXM_plate_1_F01_19X_232_042_TGGATT ILLUMINA 1220806464 bp
SRR21823142 RNA-Seq of Salix purpurea: female outcross progeny female plant with emerging catkin from USA:NY, 13437_32540_166619_HGCCFBGXM_plate_1_E01_19X_232_032_GCGAAT ILLUMINA 2143550 bp
SRR21823143 RNA-Seq of Salix purpurea: S2 progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166618_HGCCFBGXM_plate_1_D01_18X_551_358_GCTCGA ILLUMINA 854556286 bp
SRR21823144 RNA-Seq of Salix purpurea: male outcross progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166638_HGCCFBGXM_plate_1_H03_19X_562_328_AATAGC ILLUMINA 313242444 bp
SRR21823145 RNA-Seq of Salix purpurea: male outcross progeny male plant with emerging catkin from USA:NY, 13437_32540_166637_HGCCFBGXM_plate_1_G03_19X_562_230_GCATGG ILLUMINA 721792926 bp
SRR21823146 RNA-Seq of Salix purpurea: male outcross progeny male plant with emerging catkin from USA:NY, 13437_32540_166636_HGCCFBGXM_plate_1_F03_19X_562_165_CTCCAT ILLUMINA 2066064 bp
SRR21823147 RNA-Seq of Salix purpurea: male outcross progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166635_HGCCFBGXM_plate_1_E03_19X_562_090_TAGGCT ILLUMINA 919896248 bp
SRR21823148 RNA-Seq of Salix purpurea: S2 progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166617_HGCCFBGXM_plate_1_C01_18X_551_271_CAAGCA ILLUMINA 266913642 bp
SRR21823149 RNA-Seq of Salix purpurea: male outcross progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166634_HGCCFBGXM_plate_1_D03_19X_562_052_ACAGAT ILLUMINA 1012418832 bp
SRR21823150 RNA-Seq of Salix purpurea: male outcross progeny male plant with emerging catkin from USA:NY, 13437_32540_166633_HGCCFBGXM_plate_1_C03_19X_562_012_AAGACA ILLUMINA 836274320 bp
SRR21823151 RNA-Seq of Salix purpurea: male outcross progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166632_HGCCFBGXM_plate_1_B03_19X_562_011_TGACAC ILLUMINA 1057732748 bp
SRR21823152 RNA-Seq of Salix purpurea: female outcross progeny female plant with emerging catkin from USA:NY, 13437_32540_166631_HGCCFBGXM_plate_1_A03_19X_232_200_CTCTCG ILLUMINA 246862312 bp
SRR21823153 RNA-Seq of Salix purpurea: female outcross progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166630_HGCCFBGXM_plate_1_H02_19X_232_191_GATTGT ILLUMINA 1395889306 bp
SRR21823154 RNA-Seq of Salix purpurea: female outcross progeny female plant with emerging catkin from USA:NY, 13437_32540_166629_HGCCFBGXM_plate_1_G02_19X_232_190_CAACAG ILLUMINA 998057606 bp
SRR21823155 RNA-Seq of Salix purpurea: female outcross progeny male plant with emerging catkin from USA:NY, 13437_32540_166628_HGCCFBGXM_plate_1_F02_19X_232_179_ACCGTG ILLUMINA 1184323888 bp
SRR21823156 RNA-Seq of Salix purpurea: female outcross progeny female plant with emerging catkin from USA:NY, 13437_32540_166627_HGCCFBGXM_plate_1_E02_19X_232_134_TGGCGA ILLUMINA 93450868 bp
SRR21823157 RNA-Seq of Salix purpurea: female outcross progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166626_HGCCFBGXM_plate_1_D02_19X_232_088_CGCAAC ILLUMINA 248328010 bp
SRR21823158 RNA-Seq of Salix purpurea: female outcross progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166625_HGCCFBGXM_plate_1_C02_19X_232_081_GTTACC ILLUMINA 1122491694 bp
SRR21823159 RNA-Seq of Salix purpurea: S2 progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166616_HGCCFBGXM_plate_1_B01_18X_551_042_AACGCC ILLUMINA 536094674 bp
SRR21823160 RNA-Seq of Salix purpurea: S2 progeny monoecious plant with emerging catkin from USA:NY, 13437_32540_166615_HGCCFBGXM_plate_1_A01_18X_551_008_TTTATG ILLUMINA 173781920 bp
PRJNA889596 Unraveling genome expression (de) regulation to modulate wood formation in Salix purpurea Pagano et al., 2023
51
Library Title Platform Total Base VCF File
SRR21915707 RNA-Seq of Salix purpurea: 1 month potted male 50ZEB\, recovery treatment plant with roots biological replicate 3 from Poland, R50M1_3 ILLUMINA 14190072600 bp
SRR21915708 RNA-Seq of Salix purpurea: 1 month potted male 50ZEB\, recovery treatment plant with roots biological replicate 2 from Poland, R50M1_2 ILLUMINA 14100256500 bp
SRR21915709 RNA-Seq of Salix purpurea: 1 month potted male 50ZEB\, recovery treatment plant with roots biological replicate 1 from Poland, R50M1_1 ILLUMINA 12529080000 bp
SRR21915710 RNA-Seq of Salix purpurea: 1 month potted male 0ZEB\, recovery treatment plant with roots biological replicate 3 from Poland, R0M1_3 ILLUMINA 13055148600 bp
SRR21915711 RNA-Seq of Salix purpurea: 1 month potted male 0ZEB\, recovery treatment plant with roots biological replicate 2 from Poland, R0M1_2 ILLUMINA 13794083700 bp
SRR21915712 RNA-Seq of Salix purpurea: 1 month potted male 0ZEB\, recovery treatment plant with roots biological replicate 1 from Poland, R0M1_1 ILLUMINA 14787224100 bp
SRR21915835 RNA-Seq of Salix purpurea: 1 month potted male 50ZEB\, recovery treatment plant with internodes biological replicate 3 from Poland, I50M1_3 ILLUMINA 14811734400 bp
SRR21915836 RNA-Seq of Salix purpurea: 1 month potted male 50ZEB\, recovery treatment plant with internodes biological replicate 2 from Poland, I50M1_2 ILLUMINA 13147920600 bp
SRR21915837 RNA-Seq of Salix purpurea: 1 month potted male 50ZEB\, potted treatment plant with internodes biological replicate 1 from Poland, I50M1_1 ILLUMINA 12404489100 bp
SRR21915838 RNA-Seq of Salix purpurea: 1 month potted male 0ZEB\, recovery treatment plant with internodes biological replicate 3 from Poland, I0M1_3 ILLUMINA 13086210900 bp
SRR21915839 RNA-Seq of Salix purpurea: 1 month potted male 0ZEB\, recovery treatment plant with internodes biological replicate 2 from Poland, I0M1_2 ILLUMINA 13131462600 bp
SRR21915840 RNA-Seq of Salix purpurea: 1 month potted male 0ZEB\, recovery treatment plant with internodes biological replicate 1 from Poland, I0M1_1 ILLUMINA 15622378800 bp
SRR21916238 RNA-Seq of Salix purpurea: 2 month potted male 50ZEB\, recovery treatment plant with internodes biological replicate 3 from Poland, I50M2_3 ILLUMINA 12800081700 bp
SRR21916239 RNA-Seq of Salix purpurea: 2 month potted male 50ZEB\, recovery treatment plant with internodes biological replicate 2 from Poland, I50M2_2 ILLUMINA 13117963500 bp
SRR21916240 RNA-Seq of Salix purpurea: 2 month potted male 50ZEB\, recovery treatment plant with internodes biological replicate 1 from Poland, I50M2_1 ILLUMINA 12956103300 bp
SRR21916241 RNA-Seq of Salix purpurea: 2 month potted male 0ZEB\, recovery treatment plant with internodes biological replicate 3 from Poland, I0M2_3 ILLUMINA 12411004200 bp
SRR21916242 RNA-Seq of Salix purpurea: 2 month potted male 0ZEB\, recovery treatment plant with internodes biological replicate 2 from Poland, I0M2_2 ILLUMINA 12914244600 bp
SRR21916243 RNA-Seq of Salix purpurea: 2 month potted male 0ZEB\, recovery treatment plant with internodes biological replicate 1 from Poland, I0M2_1 ILLUMINA 13189303800 bp
SRR21913244 RNA-Seq of Salix purpurea: 3 weeks in vitro male 50ZEB\, recovery treatment plant with roots biological replicate 3 from Poland, J50R2Z_3 ILLUMINA 12239127300 bp
SRR21913245 RNA-Seq of Salix purpurea: 3 weeks in vitro male 50ZEB\, recovery treatment plant with roots biological replicate 2 from Poland, J50R2Z_2 ILLUMINA 12673511100 bp
SRR21913246 RNA-Seq of Salix purpurea: 3 weeks in vitro male 50ZEB\, recovery treatment plant with roots biological replicate 1 from Poland, J50R2Z_1 ILLUMINA 14557176600 bp
SRR21913247 RNA-Seq of Salix purpurea: 3 weeks in vitro male 50ZEB\, recovery treatment plant with internodes biological replicate 3 from Poland, J50I2Z_3 ILLUMINA 15894847500 bp
SRR21913248 RNA-Seq of Salix purpurea: 3 weeks in vitro male 50ZEB\, recovery treatment plant with internodes biological replicate 2 from Poland, J50I2Z_2 ILLUMINA 12074654700 bp
SRR21913249 RNA-Seq of Salix purpurea: 3 weeks in vitro male 50ZEB\, recovery treatment plant with internodes biological replicate 1 from Poland, J50I2Z_1 ILLUMINA 15256239300 bp
SRR21913279 RNA-Seq of Salix purpurea: 3 weeks in vitro male 100AZA\, recovery treatment plant with roots biological replicate 3 from Poland, JR2AZA_2 ILLUMINA 16764972900 bp
SRR21913280 RNA-Seq of Salix purpurea: 3 weeks in vitro male 100AZA\, recovery treatment plant with roots biological replicate 2 from Poland, JR2AZA_3 ILLUMINA 12129391500 bp
SRR21913281 RNA-Seq of Salix purpurea: 3 weeks in vitro male 100AZA\, recovery treatment plant with roots biological replicate 1 from Poland, JR2AZA_1 ILLUMINA 19501535100 bp
SRR21913282 RNA-Seq of Salix purpurea: 3 week in vitro male 100AZA\, recovery treatment plant with internodes biological replicate 3 from Poland, JI2AZA_2 ILLUMINA 12881825100 bp
SRR21913283 RNA-Seq of Salix purpurea: 3 weeks in vitro male 100AZA\, recovery treatment plant with internodes biological replicate 2 from Poland, JI2AZA_1 ILLUMINA 14046672900 bp
SRR21913284 RNA-Seq of Salix purpurea: 3 weeks in vitro male 100AZA\, recovery treatment plant with internodes biological replicate 1 from Poland, JI2AZA_3 ILLUMINA 21297797400 bp
SRR21914042 RNA-Seq of Salix purpurea: 2 months potted male 0ZEB\, recovery treatment plant with bark biological replicate 3 from Poland, J0B4Z_3 ILLUMINA 14534790300 bp
SRR21914043 RNA-Seq of Salix purpurea: 2 months potted male 0ZEB\, recovery treatment plant with bark biological replicate 2 from Poland, J0B4Z_2 ILLUMINA 24312725100 bp
SRR21914044 RNA-Seq of Salix purpurea: 2 months potted male 0ZEB\, recovery treatment plant with bark biological replicate 1 from Poland, J0B4Z_1 ILLUMINA 12312007200 bp
SRR21914425 RNA-Seq of Salix purpurea: 2 months potted male 50ZEB\, recovery treatment plant with xylem biological replicate 3 from Poland, X50M2_3 ILLUMINA 13717534500 bp
SRR21914426 RNA-Seq of Salix purpurea: 2 months potted male 50ZEB\, recovery treatment plant with xylem biological replicate 2 from Poland, X50M2_2 ILLUMINA 12395017200 bp
SRR21914427 RNA-Seq of Salix purpurea: 2 months potted male 50ZEB\, recovery treatment plant with xylem biological replicate 1 from Poland, X50M2_1 ILLUMINA 12541122300 bp
SRR21914428 RNA-Seq of Salix purpurea: 2 months potted male 0ZEB\, recovery treatment plant with xylem biological replicate 3 from Poland, X0M2_3 ILLUMINA 13164165000 bp
SRR21914429 RNA-Seq of Salix purpurea: 2 months potted male 0ZEB\, recovery treatment plant with xylem biological replicate 2 from Poland, X0M2_2 ILLUMINA 14096580600 bp
SRR21914430 RNA-Seq of Salix purpurea: 2 months potted male 0ZEB\, recovery treatment plant with xylem biological replicate 1 from Poland, X0M2_1 ILLUMINA 13670857500 bp
SRR21903507 RNA-Seq of Salix purpurea: 3 weeks in vitro male 0ZEB\, recovery treatment plant with roots biological replicate 3 from Poland, J0R2CT_3 ILLUMINA 13858343100 bp
SRR21903508 RNA-Seq of Salix purpurea: 3 weeks in vitro male 0ZEB\, recovery treatment plant with roots biological replicate 2 from Poland, J0R2CT_2 ILLUMINA 16243575900 bp
SRR21903509 RNA-Seq of Salix purpurea: 3 weeks in vitro male 0ZEB\, recovery treatment plant with roots biological replicate 1 from Poland, J0R2CT_1 ILLUMINA 14089083600 bp
SRR21903510 RNA-Seq of Salix purpurea: 3 weeks in vitro male 0ZEB\, recovery treatment plant with internodes biological replicate 3 from Poland, J0I2CT_3 ILLUMINA 14777486100 bp
SRR21903511 RNA-Seq of Salix purpurea: 3 weeks in vitro male 0ZEB\, recovery treatment plant with internodes biological replicate 2 from Poland, J0I2CT_2 ILLUMINA 12640708500 bp
SRR21903512 RNA-Seq of Salix purpurea: 3 weeks in vitro male 0ZEB\, recovery treatment plant with internodes biological replicate 1 from Poland, J0I2CT_1 ILLUMINA 13910286900 bp
SRR21903513 RNA-Seq of Salix purpurea: 2 weeks in vitro male 50ZEB\, treat treatment plant with internodes biological replicate 3 from Poland, J50I1Z_3 ILLUMINA 21328974900 bp
SRR21903514 RNA-Seq of Salix purpurea: 2 weeks in vitro male 50ZEB\, treat treatment plant with internodes biological replicate 2 from Poland, J50I1Z_2 ILLUMINA 12226941300 bp
SRR21903515 RNA-Seq of Salix purpurea: 2 weeks in vitro male 50ZEB\, treat treatment plant with internodes biological replicate 1 from Poland, J50I1Z_1 ILLUMINA 19906794900 bp
SRR21904864 RNA-Seq of Salix purpurea: 2 months in vitro male 0ZEB\, recovery treatment plant with xylem biological replicate 3 from Poland, J0I1Z_3 ILLUMINA 13221555300 bp
SRR21904865 RNA-Seq of Salix purpurea: 2 months in vitro male 0ZEB\, recovery treatment plant with xylem biological replicate 2 from Poland, J0I1Z_2 ILLUMINA 14074705200 bp
SRR21904866 RNA-Seq of Salix purpurea: 2 months in vitro male 0ZEB\, recovery treatment plant with xylem biological replicate 1 from Poland, J0I1Z_1 ILLUMINA 13403494200 bp

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